Variant report

Variant	rs17823487
Chromosome Location	chr13:61541324-61541325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1504418	0.82[ASN][1000 genomes]
rs160015	0.85[ASN][1000 genomes]
rs17822177	0.85[ASN][1000 genomes]
rs191005	0.85[ASN][1000 genomes]
rs2655705	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770909	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302886	0.85[ASN][1000 genomes]
rs303372	0.85[ASN][1000 genomes]
rs303374	0.85[ASN][1000 genomes]
rs717049	0.90[ASN][1000 genomes]
rs7327556	1.00[JPT][hapmap]
rs7327571	1.00[JPT][hapmap]
rs74082811	0.89[AFR][1000 genomes]
rs7993826	0.95[ASN][1000 genomes]
rs9317154	0.85[ASN][1000 genomes]
rs9528263	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61539400-61543600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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