Variant report

Variant	rs9528263
Chromosome Location	chr13:61495373-61495374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1504418	0.92[ASN][1000 genomes]
rs1504421	0.82[ASN][1000 genomes]
rs17223208	0.82[ASN][1000 genomes]
rs17822177	0.95[ASN][1000 genomes]
rs17823487	0.90[ASN][1000 genomes]
rs1857725	0.80[AFR][1000 genomes]
rs1983090	0.84[ASN][1000 genomes]
rs2655705	0.90[ASN][1000 genomes]
rs2770909	0.90[ASN][1000 genomes]
rs717049	1.00[ASN][1000 genomes]
rs7327556	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7327571	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs7993826	0.95[ASN][1000 genomes]
rs9598190	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61494400-61496000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61494600-61495800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:61495200-61495600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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