Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1504407	0.96[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1504411	0.87[EUR][1000 genomes]
rs1504421	0.93[ASN][1000 genomes]
rs17223208	0.93[ASN][1000 genomes]
rs2047902	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2047903	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2137844	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4086378	0.88[EUR][1000 genomes]
rs717049	0.84[ASN][1000 genomes]
rs7327556	1.00[CHB][hapmap]
rs7327571	1.00[CHB][hapmap]
rs7336402	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9528262	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9528263	0.84[ASN][1000 genomes]
rs9538975	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9538981	0.95[CEU][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9538984	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9570403	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9570404	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9570410	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9598190	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61495800-61497000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61496600-61497200	Enhancers	Fetal Heart	heart
3	chr13:61496600-61497800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:61496600-61498000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:61496800-61497000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:61496800-61497200	Flanking Active TSS	NHEK	skin

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