Variant report

Variant	rs9528262
Chromosome Location	chr13:61493995-61493996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TDRD3-3	chr13:61493947-61494141	ENSG00000227510.2

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11148531	1.00[ASN][1000 genomes]
rs11840739	1.00[ASN][1000 genomes]
rs11840753	0.87[ASN][1000 genomes]
rs1394319	1.00[ASN][1000 genomes]
rs1410792	0.89[ASN][1000 genomes]
rs1410793	0.87[ASN][1000 genomes]
rs1504407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504411	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556103	0.98[ASN][1000 genomes]
rs159885	0.98[ASN][1000 genomes]
rs1857725	0.89[ASN][1000 genomes]
rs1983090	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2047902	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2047903	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2134871	0.87[ASN][1000 genomes]
rs2137843	0.97[ASN][1000 genomes]
rs2137844	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2137845	0.97[ASN][1000 genomes]
rs214120	0.98[ASN][1000 genomes]
rs2174313	1.00[ASN][1000 genomes]
rs2221400	0.86[ASN][1000 genomes]
rs301638	0.98[ASN][1000 genomes]
rs301651	0.98[ASN][1000 genomes]
rs4086378	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7140034	1.00[ASN][1000 genomes]
rs73221633	0.98[ASN][1000 genomes]
rs7336402	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9528260	0.98[ASN][1000 genomes]
rs9538970	0.98[ASN][1000 genomes]
rs9538971	0.98[ASN][1000 genomes]
rs9538973	0.98[ASN][1000 genomes]
rs9538974	0.98[ASN][1000 genomes]
rs9538975	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538981	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9538984	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9563847	0.98[ASN][1000 genomes]
rs9563848	1.00[ASN][1000 genomes]
rs9563850	0.98[ASN][1000 genomes]
rs9570388	0.98[ASN][1000 genomes]
rs9570389	0.98[ASN][1000 genomes]
rs9570391	0.98[ASN][1000 genomes]
rs9570403	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9570404	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9570410	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9598189	1.00[ASN][1000 genomes]
rs9598204	0.89[ASN][1000 genomes]
rs974820	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61493600-61494400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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