Variant report

Variant	rs9538971
Chromosome Location	chr13:61455826-61455827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11148531	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11840739	0.98[ASN][1000 genomes]
rs11840753	0.88[ASN][1000 genomes]
rs1394319	0.98[ASN][1000 genomes]
rs1410792	0.87[ASN][1000 genomes]
rs1410793	0.89[ASN][1000 genomes]
rs1504407	0.98[ASN][1000 genomes]
rs1556103	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs159885	0.97[ASN][1000 genomes]
rs1857725	0.90[ASN][1000 genomes]
rs2047902	0.89[ASN][1000 genomes]
rs2047903	0.89[ASN][1000 genomes]
rs2134871	0.89[ASN][1000 genomes]
rs2137843	0.95[ASN][1000 genomes]
rs2137844	0.95[ASN][1000 genomes]
rs2137845	0.95[ASN][1000 genomes]
rs214120	0.97[ASN][1000 genomes]
rs2174313	0.98[ASN][1000 genomes]
rs2221400	0.87[ASN][1000 genomes]
rs301638	0.97[ASN][1000 genomes]
rs301651	0.97[ASN][1000 genomes]
rs3850088	0.88[AFR][1000 genomes]
rs7140034	0.98[ASN][1000 genomes]
rs73221633	1.00[ASN][1000 genomes]
rs7336402	0.97[ASN][1000 genomes]
rs9528260	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9528262	0.98[ASN][1000 genomes]
rs9538970	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538973	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538974	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538975	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9538981	0.98[ASN][1000 genomes]
rs9538984	0.89[ASN][1000 genomes]
rs9563847	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9563848	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563850	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9570388	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9570389	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9570391	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9570403	0.87[ASN][1000 genomes]
rs9570404	0.87[ASN][1000 genomes]
rs9598189	0.98[ASN][1000 genomes]
rs9598204	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61451000-61459000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61454600-61456400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:61455200-61456600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:61455400-61456400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:61455400-61456400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:61455600-61456400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:61455600-61456600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:61455800-61456400	Enhancers	HUES6 Cell Line	embryonic stem cell

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