Variant report

Variant	rs9570388
Chromosome Location	chr13:61452539-61452540
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11148531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11840739	0.98[ASN][1000 genomes]
rs11840753	0.89[ASN][1000 genomes]
rs1394319	0.98[ASN][1000 genomes]
rs1410792	0.87[ASN][1000 genomes]
rs1410793	0.86[ASN][1000 genomes]
rs1504407	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes]
rs1556103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159885	0.97[ASN][1000 genomes]
rs1857725	0.87[ASN][1000 genomes]
rs2047902	0.89[ASN][1000 genomes]
rs2047903	0.89[ASN][1000 genomes]
rs2134871	0.86[ASN][1000 genomes]
rs2137843	0.95[ASN][1000 genomes]
rs2137844	0.95[ASN][1000 genomes]
rs2137845	0.95[ASN][1000 genomes]
rs214120	0.97[ASN][1000 genomes]
rs2174313	0.98[ASN][1000 genomes]
rs2221400	0.84[ASN][1000 genomes]
rs301638	0.97[ASN][1000 genomes]
rs301651	1.00[ASN][1000 genomes]
rs3850088	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7140034	0.98[ASN][1000 genomes]
rs73221633	0.97[ASN][1000 genomes]
rs7336402	0.97[ASN][1000 genomes]
rs9528260	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9528262	0.98[ASN][1000 genomes]
rs9538970	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9538971	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538975	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9538981	0.82[CEU][hapmap];0.98[ASN][1000 genomes]
rs9538984	0.89[ASN][1000 genomes]
rs9563847	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9570381	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9570389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570391	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9570403	0.87[ASN][1000 genomes]
rs9570404	0.87[ASN][1000 genomes]
rs9598189	0.98[ASN][1000 genomes]
rs9598204	0.87[ASN][1000 genomes]
rs974820	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61451000-61459000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links