Variant report

Variant	rs9570381
Chromosome Location	chr13:61418745-61418746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11148531	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1504407	0.85[CEU][hapmap]
rs1556103	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1606636	0.80[ASN][1000 genomes]
rs1606647	0.80[ASN][1000 genomes]
rs3850088	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528260	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9538970	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9538973	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9538974	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9538981	0.83[CEU][hapmap]
rs9563847	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9563848	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9563850	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570388	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9570389	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9570391	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61413200-61418800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links