Variant report

Variant	rs1504407
Chromosome Location	chr13:61490974-61490975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:61490935-61490985	Caco-2	colon:	n/a
2	chr13:61490935-61490985	AG09319	gingival:	n/a
3	chr13:61490935-61490985	HEK293	kidney:	embryo
4	chr13:61490935-61490985	HRPEpiC	eye:	n/a
5	chr13:61490935-61490985	NHBE	bronchial:	n/a
6	chr13:61490935-61490985	MCF10A-Er-Src	breast:	n/a
7	chr13:61490935-61490985	AoSMC	blood vessel:	n/a
8	chr13:61490935-61490985	HRE	kidney:	n/a
9	chr13:61490935-61490985	HCT-116	colon:	n/a
10	chr13:61490935-61490985	HMEC	breast:	n/a
11	chr13:61490935-61490985	HIPEpiC	eye:	n/a
12	chr13:61490935-61490985	A549	lung:	n/a
13	chr13:61490935-61490985	HEEpiC	esophagus:	n/a
14	chr13:61490935-61490985	CMK	blood:	n/a
15	chr13:61490935-61490985	HCF	heart:	n/a
16	chr13:61490935-61490985	BJ	skin:	n/a
17	chr13:61490935-61490985	NB4	blood:	n/a
18	chr13:61490935-61490985	GM12891	blood:	n/a
19	chr13:61490935-61490985	HRCEpiC	kidney:	n/a
20	chr13:61490935-61490985	AG04450	lung:	fetal
21	chr13:61490935-61490985	GM19239	blood:	n/a
22	chr13:61490935-61490985	K562	blood:	n/a
23	chr13:61490935-61490985	ECC-1	luminal epithelium:	n/a
24	chr13:61490935-61490985	PrEC	prostate:	n/a
25	chr13:61490935-61490985	Hepatocyte	liver:	n/a
26	chr13:61490935-61490985	SK-N-SH	brain:	n/a
27	chr13:61490935-61490985	HepG2	liver:	n/a
28	chr13:61490935-61490985	HUVEC	blood vessel:	n/a
29	chr13:61490935-61490985	HAEpiC	amniotic membrane:	n/a
30	chr13:61490935-61490985	GM06990	blood:	n/a
31	chr13:61490935-61490985	ovcar-3	ovarian:	n/a
32	chr13:61490935-61490985	NH-A	brain:	n/a
33	chr13:61490935-61490985	Hela-S3	cervix:	n/a
34	chr13:61490935-61490985	IMR90	lung:	fetal
35	chr13:61490935-61490985	HCM	heart:	n/a
36	chr13:61490935-61490985	SKMC	muscle:	n/a
37	chr13:61490935-61490985	BE2_C	brain:	n/a
38	chr13:61490935-61490985	PANC-1	pancreas:	n/a
39	chr13:61490935-61490985	H1-hESC	embryonic stem cell:	embryo
40	chr13:61490935-61490985	SK-N-MC	brain:	n/a
41	chr13:61490935-61490985	NHDF-neo	bronchial:	n/a
42	chr13:61490935-61490985	T-47D	breast:	n/a
43	chr13:61490935-61490985	NT2-D1	testis:	n/a
44	chr13:61490935-61490985	Jurkat	blood:	n/a
45	chr13:61490935-61490985	AG09309	skin:	n/a
46	chr13:61490935-61490985	GM12878	blood:	n/a
47	chr13:61490935-61490985	HNPCEpiC	eye:	n/a
48	chr13:61490935-61490985	HCPEpiC	choroid plexus:	n/a
49	chr13:61490935-61490985	GM12892	blood:	n/a
50	chr13:61490935-61490985	ProgFib	skin:	n/a

No data

Variant related genes	Relation type
ENSG00000227510	CpG island

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11148531	1.00[ASN][1000 genomes]
rs11840739	1.00[ASN][1000 genomes]
rs11840753	0.87[ASN][1000 genomes]
rs1394319	1.00[ASN][1000 genomes]
rs1410792	0.89[ASN][1000 genomes]
rs1410793	0.87[ASN][1000 genomes]
rs1504411	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556103	0.98[ASN][1000 genomes]
rs159885	0.98[ASN][1000 genomes]
rs1857725	0.89[ASN][1000 genomes]
rs1983090	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2047902	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2047903	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2134871	0.87[ASN][1000 genomes]
rs2137843	0.97[ASN][1000 genomes]
rs2137844	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2137845	0.97[ASN][1000 genomes]
rs214120	0.98[ASN][1000 genomes]
rs2174313	1.00[ASN][1000 genomes]
rs2221400	0.86[ASN][1000 genomes]
rs301638	0.98[ASN][1000 genomes]
rs301651	0.98[ASN][1000 genomes]
rs4086378	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7140034	1.00[ASN][1000 genomes]
rs73221633	0.98[ASN][1000 genomes]
rs7336402	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9528260	0.98[ASN][1000 genomes]
rs9528262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9538970	0.98[ASN][1000 genomes]
rs9538971	0.98[ASN][1000 genomes]
rs9538973	0.98[ASN][1000 genomes]
rs9538974	0.98[ASN][1000 genomes]
rs9538975	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538981	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9538984	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9563847	0.98[ASN][1000 genomes]
rs9563848	1.00[ASN][1000 genomes]
rs9563850	0.98[ASN][1000 genomes]
rs9570388	0.98[ASN][1000 genomes]
rs9570389	0.98[ASN][1000 genomes]
rs9570391	0.98[ASN][1000 genomes]
rs9570403	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9570404	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9570410	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9598189	1.00[ASN][1000 genomes]
rs9598204	0.89[ASN][1000 genomes]
rs974820	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61489600-61492800	Weak transcription	Fetal Brain Male	brain

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