Variant report

Variant	rs9570404
Chromosome Location	chr13:61519593-61519594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11148531	0.89[ASN][1000 genomes]
rs11840739	0.89[ASN][1000 genomes]
rs1394319	0.89[ASN][1000 genomes]
rs1410792	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1410793	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1504407	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1504411	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1556103	0.87[ASN][1000 genomes]
rs159885	0.87[ASN][1000 genomes]
rs1857725	0.97[ASN][1000 genomes]
rs1983090	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2047902	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2047903	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2134871	0.98[ASN][1000 genomes]
rs2137843	0.86[ASN][1000 genomes]
rs2137844	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2137845	0.86[ASN][1000 genomes]
rs214120	0.87[ASN][1000 genomes]
rs2174313	0.89[ASN][1000 genomes]
rs2221400	0.97[ASN][1000 genomes]
rs301638	0.87[ASN][1000 genomes]
rs301651	0.87[ASN][1000 genomes]
rs4086378	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71211318	0.82[AMR][1000 genomes]
rs7140034	0.89[ASN][1000 genomes]
rs7320944	0.82[AMR][1000 genomes]
rs73221633	0.87[ASN][1000 genomes]
rs7336402	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9528260	0.87[ASN][1000 genomes]
rs9528262	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9528268	0.82[AMR][1000 genomes]
rs9528269	0.82[AMR][1000 genomes]
rs9538970	0.87[ASN][1000 genomes]
rs9538971	0.87[ASN][1000 genomes]
rs9538973	0.87[ASN][1000 genomes]
rs9538974	0.87[ASN][1000 genomes]
rs9538975	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9538981	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9538984	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563847	0.87[ASN][1000 genomes]
rs9563848	0.89[ASN][1000 genomes]
rs9563850	0.87[ASN][1000 genomes]
rs9570388	0.87[ASN][1000 genomes]
rs9570389	0.87[ASN][1000 genomes]
rs9570391	0.87[ASN][1000 genomes]
rs9570403	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570410	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9598189	0.89[ASN][1000 genomes]
rs9598204	0.97[ASN][1000 genomes]
rs974820	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61517200-61519800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:61517800-61519600	Weak transcription	Esophagus	oesophagus
3	chr13:61518000-61519800	Enhancers	NHEK	skin
4	chr13:61518200-61519600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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