Variant report

Variant	rs4086378
Chromosome Location	chr13:61549697-61549698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11148531	0.81[ASN][1000 genomes]
rs11840739	0.81[ASN][1000 genomes]
rs11840753	0.86[ASN][1000 genomes]
rs1394319	0.81[ASN][1000 genomes]
rs1410792	0.85[ASN][1000 genomes]
rs1410793	0.83[ASN][1000 genomes]
rs1504407	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1504411	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514540	0.85[AMR][1000 genomes]
rs1604858	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1606712	0.86[AMR][1000 genomes]
rs1818517	0.86[AMR][1000 genomes]
rs1857725	0.85[ASN][1000 genomes]
rs1877833	0.85[AMR][1000 genomes]
rs1949271	0.86[AMR][1000 genomes]
rs1949272	0.86[AMR][1000 genomes]
rs1983090	0.88[EUR][1000 genomes]
rs2047902	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2047903	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2134871	0.83[ASN][1000 genomes]
rs2137844	0.86[EUR][1000 genomes]
rs2174313	0.81[ASN][1000 genomes]
rs2221400	0.82[ASN][1000 genomes]
rs71211318	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7140034	0.81[ASN][1000 genomes]
rs7320944	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7336402	0.86[EUR][1000 genomes]
rs9528262	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9528268	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9528269	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9528270	0.87[AMR][1000 genomes]
rs9538975	0.80[EUR][1000 genomes]
rs9538981	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9538984	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9538996	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9538997	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9539003	0.85[AMR][1000 genomes]
rs9563848	0.81[ASN][1000 genomes]
rs9570403	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9570404	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9570410	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598189	0.81[ASN][1000 genomes]
rs9598204	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61547600-61549800	Weak transcription	Colon Smooth Muscle	Colon
2	chr13:61549200-61551400	Enhancers	Fetal Heart	heart

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