Variant report

Variant	rs9563848
Chromosome Location	chr13:61456474-61456475
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11148531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11840739	1.00[ASN][1000 genomes]
rs11840753	0.87[ASN][1000 genomes]
rs1394319	1.00[ASN][1000 genomes]
rs1410792	0.89[ASN][1000 genomes]
rs1410793	0.87[ASN][1000 genomes]
rs1504407	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs1504411	0.81[ASN][1000 genomes]
rs1556103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159885	0.98[ASN][1000 genomes]
rs1857725	0.89[ASN][1000 genomes]
rs2047902	0.90[ASN][1000 genomes]
rs2047903	0.90[ASN][1000 genomes]
rs2134871	0.87[ASN][1000 genomes]
rs2137843	0.97[ASN][1000 genomes]
rs2137844	0.97[ASN][1000 genomes]
rs2137845	0.97[ASN][1000 genomes]
rs214120	0.98[ASN][1000 genomes]
rs2174313	1.00[ASN][1000 genomes]
rs2221400	0.86[ASN][1000 genomes]
rs301638	0.98[ASN][1000 genomes]
rs301651	0.98[ASN][1000 genomes]
rs3850088	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4086378	0.81[ASN][1000 genomes]
rs7140034	1.00[ASN][1000 genomes]
rs73221633	0.98[ASN][1000 genomes]
rs7336402	0.98[ASN][1000 genomes]
rs9528260	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9528262	1.00[ASN][1000 genomes]
rs9538970	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9538971	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9538973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9538974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9538975	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9538981	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs9538984	0.90[ASN][1000 genomes]
rs9563847	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9570381	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9570388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9570389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9570391	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9570403	0.89[ASN][1000 genomes]
rs9570404	0.89[ASN][1000 genomes]
rs9570410	0.81[ASN][1000 genomes]
rs9598189	1.00[ASN][1000 genomes]
rs9598204	0.89[ASN][1000 genomes]
rs974820	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61451000-61459000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61455200-61456600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:61455600-61456600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:61456000-61456600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:61456000-61456600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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