Variant report

Variant	rs2770909
Chromosome Location	chr13:61551100-61551101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1504418	0.82[ASN][1000 genomes]
rs160015	0.85[ASN][1000 genomes]
rs17822177	0.85[ASN][1000 genomes]
rs17823487	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191005	0.85[ASN][1000 genomes]
rs2655705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs302886	0.85[ASN][1000 genomes]
rs303372	0.85[ASN][1000 genomes]
rs303374	0.85[ASN][1000 genomes]
rs717049	0.90[ASN][1000 genomes]
rs7327556	1.00[JPT][hapmap]
rs7327571	1.00[JPT][hapmap]
rs74082811	0.89[AFR][1000 genomes]
rs7993826	0.95[ASN][1000 genomes]
rs9317154	0.85[ASN][1000 genomes]
rs9528263	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3428346	chr13:61550376-61553324	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3426019	chr13:61550701-61553049	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv1792479	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv1798493	chr13:61551100-61553581	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv1801476	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv1801693	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv1795956	chr13:61551100-61553700	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv1796779	chr13:61551100-61553700	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv511514	chr13:61551100-61556688	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv900242	chr13:61551100-61600601	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61549200-61551400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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