Variant report

Variant	rs17825406
Chromosome Location	chr14:64579574-64579575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10145970	1.00[CHB][hapmap]
rs12432334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12434783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12436433	0.84[ASN][1000 genomes]
rs17225801	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs58190944	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64519400-64592000	Weak transcription	Fetal Brain Male	brain
3	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr14:64548400-64590800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:64549800-64579800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:64557200-64581200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:64558600-64581600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:64561600-64582400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:64562800-64580200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:64562800-64596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:64563200-64579600	Weak transcription	HSMM	muscle
12	chr14:64563400-64579600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:64565400-64579600	Weak transcription	Spleen	Spleen
14	chr14:64565400-64580000	Weak transcription	Lung	lung
15	chr14:64565600-64581200	Weak transcription	Colonic Mucosa	Colon
16	chr14:64565800-64588600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:64566400-64580000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:64567800-64584800	Weak transcription	Fetal Heart	heart
21	chr14:64568200-64582800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:64568400-64582200	Strong transcription	Dnd41	blood
23	chr14:64568800-64590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:64569000-64579600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:64569000-64580800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:64569000-64587800	Weak transcription	Small Intestine	intestine
27	chr14:64570600-64579600	Weak transcription	Pancreas	Pancrea
28	chr14:64570600-64580000	Weak transcription	Aorta	Aorta
29	chr14:64570600-64581000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:64570600-64581600	Weak transcription	Gastric	stomach
31	chr14:64570800-64587600	Weak transcription	Primary B cells from cord blood	blood
32	chr14:64571800-64579800	Weak transcription	Esophagus	oesophagus
33	chr14:64572200-64582200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:64572400-64581200	Weak transcription	Fetal Thymus	thymus
35	chr14:64572600-64579600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr14:64572600-64579800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr14:64572800-64579600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:64572800-64586000	Weak transcription	Fetal Lung	lung
39	chr14:64573000-64579600	Weak transcription	Fetal Brain Female	brain
40	chr14:64574400-64579600	Weak transcription	Right Ventricle	heart
41	chr14:64574400-64579800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr14:64574400-64580200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr14:64574600-64579600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:64574600-64579800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:64574600-64579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr14:64574600-64580000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:64574600-64584200	Weak transcription	HUVEC	blood vessel
48	chr14:64574600-64591800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr14:64574800-64586000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr14:64574800-64586200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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