Variant report

Variant	rs12436433
Chromosome Location	chr14:64632657-64632658
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64626714..64629690-chr14:64630227..64632798,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11850375	1.00[EUR][1000 genomes]
rs12432334	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12434783	0.86[ASN][1000 genomes]
rs12435278	1.00[EUR][1000 genomes]
rs12436020	1.00[EUR][1000 genomes]
rs12437103	1.00[EUR][1000 genomes]
rs17225801	0.90[AMR][1000 genomes]
rs17825406	0.84[ASN][1000 genomes]
rs3742614	1.00[EUR][1000 genomes]
rs4027394	1.00[AMR][1000 genomes]
rs58190944	0.91[ASN][1000 genomes]
rs58262369	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr14:64583600-64638000	Strong transcription	Placenta	Placenta
7	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:64590200-64634000	Weak transcription	HepG2	liver
9	chr14:64591000-64649000	Strong transcription	Liver	Liver
10	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
13	chr14:64606200-64647200	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:64609800-64633200	Weak transcription	Small Intestine	intestine
15	chr14:64609800-64636600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr14:64609800-64653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:64610600-64651000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:64612600-64640000	Strong transcription	Dnd41	blood
19	chr14:64612800-64640000	Strong transcription	Primary T cells from cord blood	blood
20	chr14:64613800-64635400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:64614000-64635600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:64614200-64635400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:64614200-64636000	Weak transcription	Hela-S3	cervix
24	chr14:64614200-64637000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:64614800-64644400	Weak transcription	HSMM	muscle
26	chr14:64617600-64649000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:64617800-64649000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr14:64620000-64634000	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:64620000-64651200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:64620400-64634000	Weak transcription	Spleen	Spleen
31	chr14:64620400-64634000	Weak transcription	HMEC	breast
32	chr14:64620400-64653000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:64620800-64633600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr14:64624200-64640400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr14:64624800-64639200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr14:64624800-64645800	Strong transcription	Fetal Intestine Large	intestine
37	chr14:64625000-64649000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:64625000-64658000	Weak transcription	HUVEC	blood vessel
39	chr14:64625400-64640800	Strong transcription	Fetal Stomach	stomach
40	chr14:64626400-64632800	Weak transcription	Primary B cells from cord blood	blood
41	chr14:64626800-64634200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:64626800-64635200	Weak transcription	Fetal Brain Male	brain
43	chr14:64627000-64634400	Weak transcription	NHEK	skin
44	chr14:64627000-64635600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:64627000-64638200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:64627200-64633600	Weak transcription	Psoas Muscle	Psoas
47	chr14:64627200-64660400	Weak transcription	Fetal Heart	heart
48	chr14:64627400-64646400	Weak transcription	Brain Anterior Caudate	brain
49	chr14:64627800-64641000	Strong transcription	Fetal Intestine Small	intestine
50	chr14:64628000-64632800	Weak transcription	Brain Hippocampus Middle	brain

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