Variant report

Variant	rs3742614
Chromosome Location	chr14:64735496-64735497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10137185	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs10483774	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11850375	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100658	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12432334	1.00[MEX][hapmap]
rs12434085	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12434779	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12434783	1.00[MEX][hapmap]
rs12435278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12435307	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12435338	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12435395	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12436020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12436302	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12436325	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12436433	1.00[EUR][1000 genomes]
rs12436533	1.00[CHB][hapmap]
rs12437063	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12437103	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1571512	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17225801	1.00[MEX][hapmap]
rs17226046	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17226060	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17226081	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1952586	0.85[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs1956546	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs28402888	0.85[ASN][1000 genomes]
rs28435160	0.85[ASN][1000 genomes]
rs28485225	0.96[ASN][1000 genomes]
rs28499370	0.94[ASN][1000 genomes]
rs28533821	0.85[ASN][1000 genomes]
rs28630894	0.85[ASN][1000 genomes]
rs34051517	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34422347	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs36108515	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3783733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3783734	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3783735	0.98[ASN][1000 genomes]
rs3829768	0.98[ASN][1000 genomes]
rs56735213	0.85[ASN][1000 genomes]
rs58262369	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59216189	0.98[ASN][1000 genomes]
rs59677654	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6573551	0.88[ASN][1000 genomes]
rs67160339	0.85[ASN][1000 genomes]
rs8019025	0.85[CHB][hapmap];0.95[CHD][hapmap];0.85[ASN][1000 genomes]
rs9788441	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9788467	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9788542	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64727600-64741200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:64727600-64757600	Weak transcription	Ovary	ovary
3	chr14:64733200-64739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:64733400-64736600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr14:64733600-64736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:64733600-64736800	Weak transcription	Dnd41	blood
7	chr14:64734800-64736400	Weak transcription	Adipose Nuclei	Adipose
8	chr14:64735400-64757200	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links