Variant report

Variant	rs28402888
Chromosome Location	chr14:64790807-64790808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64789559..64792915-chr14:64794645..64797859,3	MCF-7	breast:
2	chr14:64788790..64792892-chr14:64803767..64805586,3	K562	blood:
3	chr14:64790771..64792766-chr14:64798246..64800317,2	MCF-7	breast:
4	chr14:64787867..64791213-chr14:64803202..64806273,3	MCF-7	breast:
5	chr14:64788702..64791071-chr14:64791186..64793425,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214770	Chromatin interaction
ENSG00000140009	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10483774	0.87[ASN][1000 genomes]
rs12100658	0.88[ASN][1000 genomes]
rs12434085	0.92[ASN][1000 genomes]
rs12434779	0.85[ASN][1000 genomes]
rs12435278	0.87[ASN][1000 genomes]
rs12435284	0.81[EUR][1000 genomes]
rs12435307	0.87[ASN][1000 genomes]
rs12435338	0.92[ASN][1000 genomes]
rs12435395	0.92[ASN][1000 genomes]
rs12436020	0.87[ASN][1000 genomes]
rs12436302	0.87[ASN][1000 genomes]
rs12436325	0.87[ASN][1000 genomes]
rs12437063	0.92[ASN][1000 genomes]
rs1571512	0.92[ASN][1000 genomes]
rs17226046	0.87[ASN][1000 genomes]
rs17226060	0.87[ASN][1000 genomes]
rs17226081	0.92[ASN][1000 genomes]
rs1952586	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1956546	0.86[ASN][1000 genomes]
rs28435160	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485225	0.85[ASN][1000 genomes]
rs28499370	0.83[ASN][1000 genomes]
rs28533821	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28630894	0.85[ASN][1000 genomes]
rs28659912	0.95[EUR][1000 genomes]
rs34051517	0.92[ASN][1000 genomes]
rs34422347	0.92[ASN][1000 genomes]
rs36108515	0.92[ASN][1000 genomes]
rs3742614	0.85[ASN][1000 genomes]
rs3783733	0.85[ASN][1000 genomes]
rs3783734	0.87[ASN][1000 genomes]
rs3783735	0.87[ASN][1000 genomes]
rs3829768	0.87[ASN][1000 genomes]
rs55767709	0.86[ASN][1000 genomes]
rs56735213	0.85[ASN][1000 genomes]
rs59216189	0.87[ASN][1000 genomes]
rs59677654	0.87[ASN][1000 genomes]
rs6573551	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67160339	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67991812	0.98[EUR][1000 genomes]
rs7159462	0.83[EUR][1000 genomes]
rs72722305	0.81[EUR][1000 genomes]
rs72722317	0.81[EUR][1000 genomes]
rs72722320	0.83[EUR][1000 genomes]
rs72722324	0.83[EUR][1000 genomes]
rs72722326	0.83[EUR][1000 genomes]
rs8004284	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs8004907	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs8005720	0.83[EUR][1000 genomes]
rs8019025	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020953	0.83[EUR][1000 genomes]
rs9788441	0.92[ASN][1000 genomes]
rs9788467	0.92[ASN][1000 genomes]
rs9788542	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64790800-64792400	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links