Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:64798356..64802907-chr14:64803175..64806318,9	K562	blood:
2	chr14:64799200..64802907-chr14:64803448..64806295,4	K562	blood:
3	chr14:64799661..64807761-chr14:64967157..64973754,20	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12432029	1.00[ASN][1000 genomes]
rs12435284	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952586	0.98[EUR][1000 genomes]
rs28402888	0.98[EUR][1000 genomes]
rs28435160	0.98[EUR][1000 genomes]
rs28440970	1.00[ASN][1000 genomes]
rs28533821	0.98[EUR][1000 genomes]
rs28659912	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947517	1.00[ASN][1000 genomes]
rs6573551	0.90[EUR][1000 genomes]
rs66969518	1.00[ASN][1000 genomes]
rs67160339	0.98[EUR][1000 genomes]
rs7159462	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722305	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722317	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722320	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72722324	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722326	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004284	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004907	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005720	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019025	0.98[EUR][1000 genomes]
rs8020953	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64792000-64803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:64792000-64803800	Weak transcription	Osteobl	bone
3	chr14:64794000-64803200	Weak transcription	Hela-S3	cervix
4	chr14:64798600-64803800	Weak transcription	HMEC	breast
5	chr14:64799000-64803800	Weak transcription	HepG2	liver
6	chr14:64800200-64803200	Weak transcription	A549	lung
7	chr14:64800400-64804200	Weak transcription	NH-A	brain
8	chr14:64800600-64803800	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search: