Variant report

Variant	rs72722317
Chromosome Location	chr14:64743107-64743108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64742475..64745477-chr14:64747736..64750527,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140009	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12432029	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434245	0.83[EUR][1000 genomes]
rs12435284	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952586	0.81[EUR][1000 genomes]
rs2295641	0.82[EUR][1000 genomes]
rs28402888	0.81[EUR][1000 genomes]
rs28435160	0.81[EUR][1000 genomes]
rs28440970	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533821	0.81[EUR][1000 genomes]
rs28659912	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947517	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386725	0.81[EUR][1000 genomes]
rs6573551	0.82[EUR][1000 genomes]
rs66969518	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67160339	0.81[EUR][1000 genomes]
rs67991812	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145919	0.83[EUR][1000 genomes]
rs7159462	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720372	0.82[EUR][1000 genomes]
rs72720375	0.82[EUR][1000 genomes]
rs72720376	0.82[EUR][1000 genomes]
rs72720380	0.82[EUR][1000 genomes]
rs72720382	0.83[EUR][1000 genomes]
rs72722305	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722320	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72722324	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722326	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004284	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004907	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005720	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013331	0.93[EUR][1000 genomes]
rs8019025	0.81[EUR][1000 genomes]
rs8020953	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021944	0.82[EUR][1000 genomes]
rs8022694	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1307	chr14:64742037-64787315	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64727600-64757600	Weak transcription	Ovary	ovary
2	chr14:64735400-64757200	Weak transcription	Thymus	Thymus

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