Variant report

Variant	rs8005720
Chromosome Location	chr14:64792266-64792267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64789559..64792915-chr14:64794645..64797859,3	MCF-7	breast:
2	chr14:64788790..64792892-chr14:64803767..64805586,3	K562	blood:
3	chr14:64790771..64792766-chr14:64798246..64800317,2	MCF-7	breast:
4	chr14:64788702..64791071-chr14:64791186..64793425,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214770	Chromatin interaction
ENSG00000140009	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12432029	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434245	0.81[EUR][1000 genomes]
rs12435284	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952586	0.83[EUR][1000 genomes]
rs2295641	0.85[EUR][1000 genomes]
rs28402888	0.83[EUR][1000 genomes]
rs28435160	0.83[EUR][1000 genomes]
rs28440970	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533821	0.83[EUR][1000 genomes]
rs28659912	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947517	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386725	0.84[EUR][1000 genomes]
rs66969518	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67160339	0.83[EUR][1000 genomes]
rs67991812	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145919	0.81[EUR][1000 genomes]
rs7159462	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720372	0.82[EUR][1000 genomes]
rs72720375	0.82[EUR][1000 genomes]
rs72720376	0.82[EUR][1000 genomes]
rs72720380	0.82[EUR][1000 genomes]
rs72720382	0.81[EUR][1000 genomes]
rs72722305	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722317	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722320	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72722324	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722326	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004284	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004907	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013331	0.90[EUR][1000 genomes]
rs8019025	0.83[EUR][1000 genomes]
rs8020953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021944	0.82[EUR][1000 genomes]
rs8022694	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64790800-64792400	Enhancers	HSMM	muscle
2	chr14:64791200-64794000	Enhancers	Hela-S3	cervix
3	chr14:64792000-64803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:64792000-64803800	Weak transcription	Osteobl	bone

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