Variant report

Variant	rs7159462
Chromosome Location	chr14:64758876-64758877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10137185	0.81[TSI][hapmap]
rs12432029	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434245	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12435284	0.91[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1268656	0.90[TSI][hapmap]
rs1952586	0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs2295641	0.85[EUR][1000 genomes]
rs28402888	0.83[EUR][1000 genomes]
rs28435160	0.83[EUR][1000 genomes]
rs28440970	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533821	0.83[EUR][1000 genomes]
rs28659912	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947517	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386725	0.84[EUR][1000 genomes]
rs66969518	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67160339	0.83[EUR][1000 genomes]
rs67991812	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145919	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs72720372	0.82[EUR][1000 genomes]
rs72720375	0.82[EUR][1000 genomes]
rs72720376	0.82[EUR][1000 genomes]
rs72720380	0.82[EUR][1000 genomes]
rs72720382	0.81[EUR][1000 genomes]
rs72722305	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722317	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722320	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72722324	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722326	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004284	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004907	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005720	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013331	0.90[EUR][1000 genomes]
rs8019025	0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs8020953	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021944	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs8022694	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1307	chr14:64742037-64787315	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64756600-64760200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:64757000-64759000	Weak transcription	Adipose Nuclei	Adipose
3	chr14:64758200-64759000	Weak transcription	Ovary	ovary
4	chr14:64758200-64760200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr14:64758200-64761800	Active TSS	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links