Variant report

Variant	rs2295641
Chromosome Location	chr14:64886421-64886422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:64886339-64887221	K562	blood:	n/a	n/a
2	POLR2A	chr14:64886132-64886526	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64885944..64888170-chr14:64968112..64970499,2	MCF-7	breast:
2	chr14:64853800..64856722-chr14:64883915..64886482,2	MCF-7	breast:

Variant related genes	Relation type
MTHFD1	TF binding region
ENSG00000126804	Chromatin interaction
ENSG00000100714	Chromatin interaction

rs_ID	r²[population]
rs12435284	0.82[EUR][1000 genomes]
rs3825647	0.83[ASN][1000 genomes]
rs56386725	0.99[EUR][1000 genomes]
rs59942740	0.83[ASN][1000 genomes]
rs7159462	0.85[EUR][1000 genomes]
rs72722305	0.82[EUR][1000 genomes]
rs72722317	0.82[EUR][1000 genomes]
rs72722320	0.85[EUR][1000 genomes]
rs72722324	0.85[EUR][1000 genomes]
rs72722326	0.85[EUR][1000 genomes]
rs8005720	0.85[EUR][1000 genomes]
rs8020953	0.85[EUR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
2	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
3	chr14:64861800-64890600	Weak transcription	Colonic Mucosa	Colon
4	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:64862600-64898200	Weak transcription	Fetal Heart	heart
6	chr14:64862600-64905200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:64867200-64929600	Strong transcription	Dnd41	blood
9	chr14:64872600-64887400	Weak transcription	Psoas Muscle	Psoas
10	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:64875400-64912000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:64875400-64913200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:64876400-64887400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:64876400-64887400	Strong transcription	Fetal Muscle Leg	muscle
15	chr14:64876400-64911800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:64876800-64888600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:64877000-64887400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:64877000-64888800	Strong transcription	Fetal Intestine Small	intestine
19	chr14:64877000-64902000	Strong transcription	Fetal Stomach	stomach
20	chr14:64877000-64927000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:64877000-64929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:64877200-64887400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:64877200-64895800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:64877400-64928200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:64877800-64887400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
26	chr14:64877800-64889800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:64877800-64890800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:64877800-64901000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:64877800-64905000	Strong transcription	Adipose Nuclei	Adipose
30	chr14:64877800-64911200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:64877800-64929200	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr14:64878200-64921200	Strong transcription	Liver	Liver
33	chr14:64878600-64899600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr14:64878600-64912200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr14:64878800-64888200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:64878800-64896600	Strong transcription	Fetal Intestine Large	intestine
37	chr14:64878800-64912000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:64879000-64887800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:64879000-64889800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
40	chr14:64879000-64890200	Strong transcription	Primary B cells from cord blood	blood
41	chr14:64879600-64910200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr14:64880400-64894400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr14:64881400-64896400	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr14:64881600-64887600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr14:64881600-64888000	Strong transcription	Fetal Brain Female	brain
46	chr14:64881600-64895000	Strong transcription	HMEC	breast
47	chr14:64881600-64895400	Strong transcription	HepG2	liver
48	chr14:64881600-64912600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr14:64881600-64929000	Strong transcription	Fetal Thymus	thymus
50	chr14:64881800-64887400	Strong transcription	Skeletal Muscle Female	skeletal muscle

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