Variant report

Variant	rs59942740
Chromosome Location	chr14:64881688-64881689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:64881475-64881768	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MTHFD1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2295641	0.83[ASN][1000 genomes]
rs3825647	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64886200	Weak transcription	Fetal Brain Male	brain
2	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
3	chr14:64856200-64882200	Weak transcription	HSMMtube	muscle
4	chr14:64856200-64883800	Weak transcription	Esophagus	oesophagus
5	chr14:64856200-64885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:64856200-64886400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
8	chr14:64856400-64882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:64856800-64881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:64856800-64881800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:64856800-64882000	Weak transcription	Fetal Lung	lung
12	chr14:64856800-64882000	Weak transcription	NHLF	lung
13	chr14:64856800-64885800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:64857000-64881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:64860800-64882400	Weak transcription	Spleen	Spleen
16	chr14:64861000-64882200	Weak transcription	Ovary	ovary
17	chr14:64861000-64882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:64861000-64882400	Weak transcription	Gastric	stomach
19	chr14:64861200-64886000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:64861800-64881800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:64861800-64882200	Weak transcription	Pancreas	Pancrea
22	chr14:64861800-64882200	Weak transcription	Right Ventricle	heart
23	chr14:64861800-64890600	Weak transcription	Colonic Mucosa	Colon
24	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:64862600-64898200	Weak transcription	Fetal Heart	heart
26	chr14:64862600-64905200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:64867200-64929600	Strong transcription	Dnd41	blood
29	chr14:64867800-64883800	Weak transcription	Brain Germinal Matrix	brain
30	chr14:64868200-64882200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:64869000-64885800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr14:64869400-64882000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:64869800-64881800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:64870600-64884400	Weak transcription	Brain Angular Gyrus	brain
35	chr14:64871000-64882000	Weak transcription	HUVEC	blood vessel
36	chr14:64871200-64885600	Weak transcription	Fetal Kidney	kidney
37	chr14:64871400-64882000	Weak transcription	Brain Anterior Caudate	brain
38	chr14:64871800-64882400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr14:64872600-64882200	Weak transcription	NHDF-Ad	bronchial
40	chr14:64872600-64883800	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:64872600-64887400	Weak transcription	Psoas Muscle	Psoas
42	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr14:64874400-64881800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr14:64875400-64912000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr14:64875400-64913200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr14:64876000-64882400	Weak transcription	Aorta	Aorta
47	chr14:64876400-64887400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:64876400-64887400	Strong transcription	Fetal Muscle Leg	muscle
49	chr14:64876400-64911800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:64876600-64881800	Weak transcription	Brain Substantia Nigra	brain

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