Variant report

Variant	rs3825647
Chromosome Location	chr14:64879500-64879501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64877531..64880461-chr14:64883695..64886757,3	K562	blood:
2	chr14:64872336..64875141-chr14:64877233..64879758,2	MCF-7	breast:
3	chr14:64853019..64856897-chr14:64876589..64880133,4	MCF-7	breast:
4	chr14:64879360..64881237-chr14:64881838..64883920,2	K562	blood:
5	chr14:64878989..64880573-chr14:64971311..64972814,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000100714	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2295641	0.83[ASN][1000 genomes]
rs59942740	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64886200	Weak transcription	Fetal Brain Male	brain
2	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
3	chr14:64856200-64882200	Weak transcription	HSMMtube	muscle
4	chr14:64856200-64883800	Weak transcription	Esophagus	oesophagus
5	chr14:64856200-64885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:64856200-64886400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
8	chr14:64856400-64882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:64856800-64881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:64856800-64881800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:64856800-64882000	Weak transcription	Fetal Lung	lung
12	chr14:64856800-64882000	Weak transcription	NHLF	lung
13	chr14:64856800-64885800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:64857000-64881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:64857200-64880400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:64860800-64882400	Weak transcription	Spleen	Spleen
17	chr14:64861000-64882200	Weak transcription	Ovary	ovary
18	chr14:64861000-64882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:64861000-64882400	Weak transcription	Gastric	stomach
20	chr14:64861200-64886000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:64861800-64881800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:64861800-64882200	Weak transcription	Pancreas	Pancrea
23	chr14:64861800-64882200	Weak transcription	Right Ventricle	heart
24	chr14:64861800-64890600	Weak transcription	Colonic Mucosa	Colon
25	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr14:64862600-64898200	Weak transcription	Fetal Heart	heart
27	chr14:64862600-64905200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr14:64867200-64929600	Strong transcription	Dnd41	blood
30	chr14:64867800-64883800	Weak transcription	Brain Germinal Matrix	brain
31	chr14:64868200-64880000	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:64868200-64882200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:64869000-64885800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr14:64869400-64882000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr14:64869800-64881800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr14:64870400-64881600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:64870600-64884400	Weak transcription	Brain Angular Gyrus	brain
38	chr14:64871000-64882000	Weak transcription	HUVEC	blood vessel
39	chr14:64871200-64885600	Weak transcription	Fetal Kidney	kidney
40	chr14:64871400-64882000	Weak transcription	Brain Anterior Caudate	brain
41	chr14:64871800-64882400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr14:64872000-64880200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr14:64872600-64881600	Weak transcription	Fetal Brain Female	brain
44	chr14:64872600-64882200	Weak transcription	NHDF-Ad	bronchial
45	chr14:64872600-64883800	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:64872600-64887400	Weak transcription	Psoas Muscle	Psoas
47	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr14:64874400-64881800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr14:64875400-64912000	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:64875400-64913200	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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