Variant report

Variant	rs34051517
Chromosome Location	chr14:64830517-64830518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10483774	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12100658	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12434085	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434779	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12435278	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12435307	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12435338	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435395	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436020	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12436302	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12436325	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12437063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437103	0.95[AMR][1000 genomes]
rs1571512	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17226046	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17226060	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17226081	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952586	0.85[ASN][1000 genomes]
rs1956546	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28402888	0.92[ASN][1000 genomes]
rs28435160	0.92[ASN][1000 genomes]
rs28485225	0.93[ASN][1000 genomes]
rs28499370	0.91[ASN][1000 genomes]
rs28533821	0.92[ASN][1000 genomes]
rs28630894	0.89[ASN][1000 genomes]
rs34422347	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36108515	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742614	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3783733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3783734	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3783735	0.95[ASN][1000 genomes]
rs3829768	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56735213	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58262369	0.86[AMR][1000 genomes]
rs59216189	0.95[ASN][1000 genomes]
rs59677654	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573551	0.84[ASN][1000 genomes]
rs67160339	0.92[ASN][1000 genomes]
rs8019025	0.92[ASN][1000 genomes]
rs9788441	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788467	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788542	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64816400-64853400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:64829800-64832000	Enhancers	K562	blood
3	chr14:64830000-64830600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:64830000-64830600	Enhancers	Fetal Heart	heart
5	chr14:64830000-64830600	Enhancers	NHEK	skin
6	chr14:64830000-64830800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:64830000-64830800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:64830000-64830800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:64830000-64830800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:64830000-64831000	Enhancers	NHDF-Ad	bronchial
11	chr14:64830000-64832400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:64830000-64832400	Enhancers	Osteobl	bone
13	chr14:64830200-64830600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:64830200-64830800	Enhancers	NH-A	brain
15	chr14:64830400-64830600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:64830400-64831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:64830400-64831600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links