Variant report

Variant	rs9788467
Chromosome Location	chr14:64793078-64793079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64788702..64791071-chr14:64791186..64793425,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10483774	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12100658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12434085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434779	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12435278	0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12435307	0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12435338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436020	0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12436302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12436325	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12437063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437103	1.00[AMR][1000 genomes]
rs1571512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17226046	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17226060	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17226081	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952586	0.85[ASN][1000 genomes]
rs1956546	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28402888	0.92[ASN][1000 genomes]
rs28435160	0.92[ASN][1000 genomes]
rs28485225	0.93[ASN][1000 genomes]
rs28499370	0.91[ASN][1000 genomes]
rs28533821	0.92[ASN][1000 genomes]
rs28630894	0.89[ASN][1000 genomes]
rs34051517	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34422347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36108515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742614	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3783733	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3783734	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3783735	0.95[ASN][1000 genomes]
rs3829768	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56735213	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58262369	0.91[AMR][1000 genomes]
rs59216189	0.95[ASN][1000 genomes]
rs59677654	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573551	0.84[ASN][1000 genomes]
rs67160339	0.92[ASN][1000 genomes]
rs8019025	0.92[ASN][1000 genomes]
rs9788441	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64791200-64794000	Enhancers	Hela-S3	cervix
2	chr14:64792000-64803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64792000-64803800	Weak transcription	Osteobl	bone

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