Variant report

Variant	rs59216189
Chromosome Location	chr14:64743130-64743131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64742475..64745477-chr14:64747736..64750527,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140009	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10136955	0.92[EUR][1000 genomes]
rs10137994	0.92[EUR][1000 genomes]
rs10483774	1.00[ASN][1000 genomes]
rs12100658	0.87[ASN][1000 genomes]
rs12434085	0.95[ASN][1000 genomes]
rs12434779	0.84[ASN][1000 genomes]
rs12435278	1.00[ASN][1000 genomes]
rs12435307	1.00[ASN][1000 genomes]
rs12435338	0.95[ASN][1000 genomes]
rs12435395	0.95[ASN][1000 genomes]
rs12436020	1.00[ASN][1000 genomes]
rs12436302	1.00[ASN][1000 genomes]
rs12436325	1.00[ASN][1000 genomes]
rs12437063	0.95[ASN][1000 genomes]
rs1571512	0.95[ASN][1000 genomes]
rs17101774	0.92[EUR][1000 genomes]
rs17226046	1.00[ASN][1000 genomes]
rs17226060	1.00[ASN][1000 genomes]
rs17226081	0.95[ASN][1000 genomes]
rs1952586	0.90[ASN][1000 genomes]
rs1956546	0.85[ASN][1000 genomes]
rs28402888	0.87[ASN][1000 genomes]
rs28435160	0.87[ASN][1000 genomes]
rs28485225	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28499370	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28533821	0.87[ASN][1000 genomes]
rs28630894	0.84[ASN][1000 genomes]
rs28663685	0.92[EUR][1000 genomes]
rs34051517	0.95[ASN][1000 genomes]
rs34422347	0.95[ASN][1000 genomes]
rs36108515	0.95[ASN][1000 genomes]
rs3742614	0.98[ASN][1000 genomes]
rs3783733	0.87[ASN][1000 genomes]
rs3783734	1.00[ASN][1000 genomes]
rs3783735	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829768	1.00[ASN][1000 genomes]
rs56735213	0.84[ASN][1000 genomes]
rs59677654	1.00[ASN][1000 genomes]
rs6573551	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs67160339	0.87[ASN][1000 genomes]
rs73267889	0.92[EUR][1000 genomes]
rs73269927	0.92[EUR][1000 genomes]
rs73269936	0.92[EUR][1000 genomes]
rs8019025	0.87[ASN][1000 genomes]
rs9788441	0.95[ASN][1000 genomes]
rs9788467	0.95[ASN][1000 genomes]
rs9788542	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1307	chr14:64742037-64787315	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64727600-64757600	Weak transcription	Ovary	ovary
2	chr14:64735400-64757200	Weak transcription	Thymus	Thymus

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