Variant report

Variant	rs17226060
Chromosome Location	chr14:64763874-64763875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64762035..64765050-chr14:64765458..64769653,3	MCF-7	breast:
2	chr14:64611735..64614161-chr14:64762430..64763965,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10137185	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs10483774	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850375	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12100658	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12432334	1.00[MEX][hapmap]
rs12434085	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12434245	1.00[ASW][hapmap]
rs12434779	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12434783	1.00[MEX][hapmap]
rs12435278	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12435307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12435338	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12435395	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12436020	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12436302	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436325	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436533	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12437063	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12437103	1.00[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1571512	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17225801	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs17226046	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17226081	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1952586	0.85[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1956546	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28402888	0.87[ASN][1000 genomes]
rs28435160	0.87[ASN][1000 genomes]
rs28485225	0.98[ASN][1000 genomes]
rs28499370	0.96[ASN][1000 genomes]
rs28533821	0.87[ASN][1000 genomes]
rs28630894	0.84[ASN][1000 genomes]
rs34051517	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34422347	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36108515	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3742614	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3783733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3783734	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783735	1.00[ASN][1000 genomes]
rs3829768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56735213	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58262369	0.86[AMR][1000 genomes]
rs59216189	1.00[ASN][1000 genomes]
rs59677654	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573551	0.89[ASN][1000 genomes]
rs67160339	0.87[ASN][1000 genomes]
rs8019025	0.85[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs9788441	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9788467	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9788542	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1307	chr14:64742037-64787315	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64761800-64764400	Enhancers	HUVEC	blood vessel
2	chr14:64762000-64764000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:64762000-64764000	Weak transcription	Brain Anterior Caudate	brain
4	chr14:64762000-64764400	Enhancers	NHEK	skin
5	chr14:64762600-64764200	Enhancers	HMEC	breast
6	chr14:64762600-64764400	Enhancers	Thymus	Thymus
7	chr14:64763000-64764200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:64763000-64764200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:64763000-64764200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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