Variant report

Variant	rs12434783
Chromosome Location	chr14:64586887-64586888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10145970	1.00[CHB][hapmap]
rs10483774	1.00[MEX][hapmap]
rs12432334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12436302	1.00[MEX][hapmap]
rs12436433	0.86[ASN][1000 genomes]
rs12437103	1.00[MEX][hapmap]
rs17225801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17226046	1.00[MEX][hapmap]
rs17226060	1.00[MEX][hapmap]
rs17825406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3742614	1.00[MEX][hapmap]
rs58190944	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64519400-64592000	Weak transcription	Fetal Brain Male	brain
3	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr14:64548400-64590800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:64562800-64596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:64565800-64588600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:64568800-64590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:64569000-64587800	Weak transcription	Small Intestine	intestine
11	chr14:64570800-64587600	Weak transcription	Primary B cells from cord blood	blood
12	chr14:64574600-64591800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:64577800-64616200	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:64579600-64611000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:64580400-64588400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:64580600-64589800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr14:64580600-64600200	Weak transcription	Stomach Mucosa	stomach
20	chr14:64581000-64592200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:64581200-64587800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr14:64581200-64588800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:64581200-64593200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:64581400-64588400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr14:64581400-64592600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:64581400-64613400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:64581800-64587800	Weak transcription	Fetal Kidney	kidney
28	chr14:64581800-64589000	Weak transcription	Esophagus	oesophagus
29	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:64582000-64589000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr14:64582000-64589000	Weak transcription	Right Ventricle	heart
32	chr14:64582000-64589200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:64582000-64589200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr14:64582200-64587600	Weak transcription	Left Ventricle	heart
35	chr14:64582200-64587800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr14:64582200-64588000	Weak transcription	Lung	lung
37	chr14:64582200-64588200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:64582200-64588800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:64582200-64588800	Weak transcription	Brain Germinal Matrix	brain
40	chr14:64582200-64588800	Weak transcription	Fetal Thymus	thymus
41	chr14:64582200-64589200	Weak transcription	Gastric	stomach
42	chr14:64582200-64589800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:64582200-64590000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:64582200-64596600	Weak transcription	Psoas Muscle	Psoas
45	chr14:64582400-64587600	Weak transcription	Fetal Muscle Leg	muscle
46	chr14:64582400-64587800	Weak transcription	Fetal Intestine Large	intestine
47	chr14:64582400-64587800	Weak transcription	Thymus	Thymus
48	chr14:64582400-64589000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr14:64582400-64589800	Weak transcription	Pancreas	Pancrea
50	chr14:64582400-64590000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links