Variant report

Variant	rs12437103
Chromosome Location	chr14:64707234-64707235
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10137185	0.85[CHD][hapmap]
rs10483774	1.00[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11850375	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100658	0.87[AMR][1000 genomes]
rs12432334	1.00[MEX][hapmap]
rs12434085	1.00[AMR][1000 genomes]
rs12434245	1.00[ASW][hapmap]
rs12434779	0.92[CHB][hapmap]
rs12434783	1.00[MEX][hapmap]
rs12435278	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12435307	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes]
rs12435338	1.00[AMR][1000 genomes]
rs12435395	0.92[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12436020	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12436302	1.00[ASW][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12436325	1.00[AMR][1000 genomes]
rs12436433	1.00[EUR][1000 genomes]
rs12436533	0.89[CHB][hapmap]
rs12437063	0.95[AMR][1000 genomes]
rs1571512	0.92[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes]
rs17225801	1.00[ASW][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs17226046	1.00[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs17226060	1.00[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs17226081	1.00[AMR][1000 genomes]
rs1952586	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs1956546	0.92[CHB][hapmap];0.83[AMR][1000 genomes]
rs34051517	0.95[AMR][1000 genomes]
rs34422347	1.00[AMR][1000 genomes]
rs36108515	1.00[AMR][1000 genomes]
rs3742614	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes]
rs3783734	1.00[AMR][1000 genomes]
rs58262369	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59677654	0.95[AMR][1000 genomes]
rs8019025	0.90[CHD][hapmap]
rs9788441	0.92[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes]
rs9788467	1.00[AMR][1000 genomes]
rs9788542	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64688800-64710600	Weak transcription	Fetal Heart	heart
2	chr14:64690200-64711200	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:64696400-64708200	Weak transcription	Aorta	Aorta
4	chr14:64698800-64716600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:64699600-64708000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:64702200-64707400	Enhancers	Thymus	Thymus
7	chr14:64702600-64715400	Weak transcription	Fetal Stomach	stomach
8	chr14:64703200-64716800	Weak transcription	Brain Germinal Matrix	brain
9	chr14:64706000-64710600	Weak transcription	Ovary	ovary
10	chr14:64706600-64707400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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