Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483774	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12434779	0.90[CHB][hapmap]
rs12435278	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12435307	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs12435395	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12436020	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12436302	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12436433	1.00[EUR][1000 genomes]
rs12436533	0.86[CHB][hapmap]
rs12437103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571512	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17226046	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17226060	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1952586	0.82[JPT][hapmap]
rs1956546	0.90[CHB][hapmap]
rs3742614	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58262369	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59677654	0.84[AMR][1000 genomes]
rs7151379	1.00[GIH][hapmap]
rs9788441	0.90[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64698800-64716600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:64702600-64715400	Weak transcription	Fetal Stomach	stomach
3	chr14:64703200-64716800	Weak transcription	Brain Germinal Matrix	brain
4	chr14:64707400-64712800	Weak transcription	Thymus	Thymus
5	chr14:64707400-64715400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:64710600-64711600	Enhancers	Fetal Heart	heart
7	chr14:64710600-64711600	Enhancers	Ovary	ovary
8	chr14:64711000-64711400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:64711200-64711400	Enhancers	Colon Smooth Muscle	Colon
10	chr14:64711200-64711400	Enhancers	Pancreas	Pancrea
11	chr14:64711200-64711400	Enhancers	NHEK	skin
12	chr14:64711200-64711800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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