Variant report

Variant	rs3783733
Chromosome Location	chr14:64855721-64855722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:64805337..64807131-chr14:64855517..64857176,2	MCF-7	breast:
2	chr14:64853586..64859592-chr14:64968792..64973445,7	MCF-7	breast:
3	chr14:64853592..64856673-chr14:64970174..64974352,5	K562	blood:
4	chr14:64853142..64856847-chr14:64968558..64973163,8	K562	blood:
5	chr14:64853800..64856722-chr14:64883915..64886482,2	MCF-7	breast:
6	chr14:64853000..64857077-chr14:64970157..64972159,5	MCF-7	breast:
7	chr14:64803480..64807605-chr14:64853546..64855883,4	K562	blood:
8	chr14:64804489..64807619-chr14:64853862..64856673,3	MCF-7	breast:
9	chr14:64852241..64854032-chr14:64855685..64858299,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100714	Chromatin interaction
ENSG00000140009	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000214770	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10483774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11850375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12100658	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12434085	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12434779	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12435278	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12435307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12435338	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12435395	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12436020	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12436302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436325	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436533	1.00[CHB][hapmap]
rs12437063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12437103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes]
rs1571512	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17226046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17226060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17226081	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1952586	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1956546	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28402888	0.85[ASN][1000 genomes]
rs28435160	0.85[ASN][1000 genomes]
rs28485225	0.85[ASN][1000 genomes]
rs28499370	0.83[ASN][1000 genomes]
rs28533821	0.85[ASN][1000 genomes]
rs28630894	0.96[ASN][1000 genomes]
rs34051517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34422347	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36108515	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3742614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3783734	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3783735	0.87[ASN][1000 genomes]
rs3829768	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56735213	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58262369	0.86[AMR][1000 genomes]
rs59216189	0.87[ASN][1000 genomes]
rs59677654	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573551	0.81[ASN][1000 genomes]
rs67160339	0.85[ASN][1000 genomes]
rs8019025	0.85[ASN][1000 genomes]
rs9788441	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9788467	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9788542	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64852600-64857000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr14:64852800-64856800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:64853000-64857000	Active TSS	K562	blood
4	chr14:64853200-64856600	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr14:64853200-64856600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr14:64853200-64856800	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr14:64853400-64856600	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr14:64853400-64857000	Active TSS	H1 Cell Line	embryonic stem cell
9	chr14:64853800-64855800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:64853800-64855800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:64853800-64855800	Active TSS	Colon Smooth Muscle	Colon
12	chr14:64853800-64855800	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr14:64853800-64855800	Active TSS	Fetal Kidney	kidney
14	chr14:64853800-64855800	Active TSS	Fetal Stomach	stomach
15	chr14:64853800-64856200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:64853800-64856200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:64853800-64856200	Active TSS	Esophagus	oesophagus
18	chr14:64853800-64856200	Active TSS	Fetal Intestine Large	intestine
19	chr14:64853800-64856200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr14:64853800-64856400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:64853800-64856400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:64853800-64856400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:64853800-64856400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:64853800-64856400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:64853800-64856400	Active TSS	Thymus	Thymus
26	chr14:64853800-64856600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr14:64853800-64856600	Active TSS	H9 Cell Line	embryonic stem cell
28	chr14:64853800-64856600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:64853800-64856600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:64853800-64856600	Active TSS	A549	lung
31	chr14:64853800-64856600	Active TSS	HSMM	muscle
32	chr14:64853800-64856600	Active TSS	NHDF-Ad	bronchial
33	chr14:64854000-64855800	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr14:64854000-64855800	Active TSS	Gastric	stomach
35	chr14:64854000-64856000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:64854000-64856000	Active TSS	Pancreas	Pancrea
37	chr14:64854000-64856200	Active TSS	Aorta	Aorta
38	chr14:64854000-64856200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:64854000-64856200	Active TSS	Ovary	ovary
40	chr14:64854000-64856200	Active TSS	Sigmoid Colon	Sigmoid Colon
41	chr14:64854000-64856200	Active TSS	HSMMtube	muscle
42	chr14:64854000-64856400	Active TSS	Right Atrium	heart
43	chr14:64854000-64857000	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr14:64854200-64855800	Active TSS	Fetal Lung	lung
45	chr14:64854200-64855800	Active TSS	Small Intestine	intestine
46	chr14:64854200-64856000	Active TSS	Left Ventricle	heart
47	chr14:64854200-64856200	Active TSS	Right Ventricle	heart
48	chr14:64854200-64856400	Active TSS	Psoas Muscle	Psoas
49	chr14:64854200-64856800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:64854400-64855800	Active TSS	Fetal Thymus	thymus

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