Variant report

Variant	rs17832932
Chromosome Location	chr2:142942795-142942796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10188131	1.00[JPT][hapmap]
rs10205625	1.00[JPT][hapmap]
rs10207741	1.00[JPT][hapmap]
rs13029758	0.88[CEU][hapmap]
rs13422148	1.00[JPT][hapmap]
rs13432762	1.00[JPT][hapmap]
rs13432866	1.00[JPT][hapmap]
rs1449488	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs17776027	0.81[EUR][1000 genomes]
rs17776043	0.81[EUR][1000 genomes]
rs17834293	0.88[EUR][1000 genomes]
rs2290142	0.80[EUR][1000 genomes]
rs4662397	0.80[EUR][1000 genomes]
rs4662398	0.80[EUR][1000 genomes]
rs6741168	1.00[ASN][1000 genomes]
rs72852654	0.81[EUR][1000 genomes]
rs72853430	0.91[EUR][1000 genomes]
rs72853432	0.91[EUR][1000 genomes]
rs7594671	0.90[CEU][hapmap]
rs9653181	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1006247	chr2:142851056-143289465	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv875255	chr2:142894573-142963976	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875256	chr2:142894573-142994328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv875257	chr2:142894573-143041082	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv459685	chr2:142909185-142963976	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv583239	chr2:142909185-142963976	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142934600-142943200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:142935200-142943200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:142938800-142943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:142938800-142943400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:142939000-142943000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:142939200-142943000	Weak transcription	HepG2	liver
7	chr2:142940200-142948200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:142942200-142943000	Enhancers	HUVEC	blood vessel
9	chr2:142942600-142942800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:142942600-142943400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:142942600-142944000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr2:142942600-142944600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:142942600-142944600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:142942600-142944600	Enhancers	Dnd41	blood

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