Variant report

Variant	rs72852654
Chromosome Location	chr2:142923753-142923754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142923038..142923887-chr2:143361151..143361987,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13029758	0.92[EUR][1000 genomes]
rs1375608	0.86[EUR][1000 genomes]
rs1449488	0.85[EUR][1000 genomes]
rs17776027	1.00[EUR][1000 genomes]
rs17776043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17832932	0.81[EUR][1000 genomes]
rs17834293	0.87[EUR][1000 genomes]
rs2290142	0.85[EUR][1000 genomes]
rs4662397	0.85[EUR][1000 genomes]
rs4662398	0.85[EUR][1000 genomes]
rs6707007	0.83[EUR][1000 genomes]
rs72847083	0.85[EUR][1000 genomes]
rs72847089	0.85[EUR][1000 genomes]
rs72849805	0.85[EUR][1000 genomes]
rs72849811	0.85[EUR][1000 genomes]
rs72849830	0.86[EUR][1000 genomes]
rs72849836	0.86[EUR][1000 genomes]
rs72849851	0.86[EUR][1000 genomes]
rs72851456	0.86[EUR][1000 genomes]
rs72851466	0.86[EUR][1000 genomes]
rs72852610	0.95[EUR][1000 genomes]
rs72852633	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72853430	0.90[EUR][1000 genomes]
rs72853432	0.90[EUR][1000 genomes]
rs72853692	0.85[EUR][1000 genomes]
rs7594671	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv875254	chr2:142833327-142931146	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006247	chr2:142851056-143289465	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv875255	chr2:142894573-142963976	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv875256	chr2:142894573-142994328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv875257	chr2:142894573-143041082	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv459685	chr2:142909185-142963976	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv583239	chr2:142909185-142963976	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142923400-142923800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:142923400-142923800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:142923400-142923800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:142923400-142923800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:142923400-142923800	Enhancers	Right Atrium	heart
6	chr2:142923600-142923800	Enhancers	GM12878-XiMat	blood

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