Variant report

Variant	rs6707007
Chromosome Location	chr2:142873592-142873593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13029758	0.84[EUR][1000 genomes]
rs1375605	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1375608	0.82[EUR][1000 genomes]
rs1449483	0.89[EUR][1000 genomes]
rs1449488	0.90[EUR][1000 genomes]
rs1562704	0.89[EUR][1000 genomes]
rs17776027	0.83[EUR][1000 genomes]
rs17776043	0.83[EUR][1000 genomes]
rs2290142	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4662397	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4662398	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72847083	0.80[EUR][1000 genomes]
rs72847089	0.80[EUR][1000 genomes]
rs72849805	0.80[EUR][1000 genomes]
rs72849811	0.80[EUR][1000 genomes]
rs72849830	0.82[EUR][1000 genomes]
rs72849836	0.82[EUR][1000 genomes]
rs72849851	0.82[EUR][1000 genomes]
rs72851456	0.82[EUR][1000 genomes]
rs72851466	0.82[EUR][1000 genomes]
rs72852610	0.87[EUR][1000 genomes]
rs72852633	0.80[EUR][1000 genomes]
rs72852654	0.83[EUR][1000 genomes]
rs72853692	0.80[EUR][1000 genomes]
rs72996320	0.84[ASN][1000 genomes]
rs7594671	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875254	chr2:142833327-142931146	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1006247	chr2:142851056-143289465	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3406901	chr2:142872007-142874855	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3377796	chr2:142872232-142874580	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3438080	chr2:142872682-142874280	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142870000-142878400	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:142870800-142877400	Weak transcription	Brain Anterior Caudate	brain
3	chr2:142871000-142874600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:142871400-142873600	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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