Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13029758	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1375605	0.87[EUR][1000 genomes]
rs1375608	0.80[EUR][1000 genomes]
rs1449483	0.87[EUR][1000 genomes]
rs1562704	0.87[EUR][1000 genomes]
rs17776027	0.85[EUR][1000 genomes]
rs17776043	0.85[EUR][1000 genomes]
rs17832932	0.80[EUR][1000 genomes]
rs2290142	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4662397	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4662398	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6707007	0.90[EUR][1000 genomes]
rs72849830	0.80[EUR][1000 genomes]
rs72849836	0.80[EUR][1000 genomes]
rs72849851	0.80[EUR][1000 genomes]
rs72851456	0.80[EUR][1000 genomes]
rs72851466	0.80[EUR][1000 genomes]
rs72852610	0.89[EUR][1000 genomes]
rs72852633	0.82[EUR][1000 genomes]
rs72852654	0.85[EUR][1000 genomes]
rs7594671	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875254	chr2:142833327-142931146	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1006247	chr2:142851056-143289465	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142877800-142879200	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr2:142877800-142884000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:142878200-142879000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:142878200-142886800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:142878400-142878800	Enhancers	Brain Hippocampus Middle	brain
6	chr2:142878400-142883400	Weak transcription	Brain Anterior Caudate	brain
7	chr2:142878600-142879400	Enhancers	Brain Substantia Nigra	brain

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