Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13029758	0.88[EUR][1000 genomes]
rs1375605	0.92[EUR][1000 genomes]
rs1375608	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1449483	0.92[EUR][1000 genomes]
rs1449488	0.80[EUR][1000 genomes]
rs1562704	0.92[EUR][1000 genomes]
rs17776027	0.86[EUR][1000 genomes]
rs17776043	0.86[EUR][1000 genomes]
rs2290142	0.80[EUR][1000 genomes]
rs4662397	0.80[EUR][1000 genomes]
rs4662398	0.80[EUR][1000 genomes]
rs6707007	0.82[EUR][1000 genomes]
rs6728101	0.83[EUR][1000 genomes]
rs72847083	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72847089	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72849805	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72849811	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72849830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851456	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851466	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72852610	0.91[EUR][1000 genomes]
rs72852633	0.84[EUR][1000 genomes]
rs72852654	0.86[EUR][1000 genomes]
rs72853692	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7594671	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875253	chr2:142805006-142855291	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142824600-142825200	Weak transcription	Brain Anterior Caudate	brain

Quick Search: