Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13029758	0.86[EUR][1000 genomes]
rs1375605	0.91[EUR][1000 genomes]
rs1375608	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1449483	0.91[EUR][1000 genomes]
rs1562704	0.91[EUR][1000 genomes]
rs17776027	0.85[EUR][1000 genomes]
rs17776043	0.85[EUR][1000 genomes]
rs6707007	0.80[EUR][1000 genomes]
rs6728101	0.82[EUR][1000 genomes]
rs72847083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72847089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849805	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849830	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72849836	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72849851	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72851456	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72851466	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72852610	0.89[EUR][1000 genomes]
rs72852633	0.82[EUR][1000 genomes]
rs72852654	0.85[EUR][1000 genomes]
rs7594671	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142796200-142809800	Weak transcription	Brain Substantia Nigra	brain
2	chr2:142800400-142803400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:142800400-142810200	Weak transcription	Brain Anterior Caudate	brain
4	chr2:142801800-142803000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr2:142801800-142803000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:142801800-142803000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:142801800-142803400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:142802400-142803000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:142802400-142803600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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