Variant report
| Variant | rs72849851 |
|---|---|
| Chromosome Location | chr2:142834210-142834211 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142832252..142835067-chr2:142835097..142836717,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs13029758 | 0.88[EUR][1000 genomes] |
| rs1375605 | 0.92[EUR][1000 genomes] |
| rs1375608 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1449483 | 0.92[EUR][1000 genomes] |
| rs1449488 | 0.80[EUR][1000 genomes] |
| rs1562704 | 0.92[EUR][1000 genomes] |
| rs17776027 | 0.86[EUR][1000 genomes] |
| rs17776043 | 0.86[EUR][1000 genomes] |
| rs2290142 | 0.80[EUR][1000 genomes] |
| rs4662397 | 0.80[EUR][1000 genomes] |
| rs4662398 | 0.80[EUR][1000 genomes] |
| rs6707007 | 0.82[EUR][1000 genomes] |
| rs6728101 | 0.83[EUR][1000 genomes] |
| rs72847083 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72847089 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72849805 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72849811 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72849830 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72849836 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72851456 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72851466 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72852610 | 0.91[EUR][1000 genomes] |
| rs72852633 | 0.84[EUR][1000 genomes] |
| rs72852654 | 0.86[EUR][1000 genomes] |
| rs72853692 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7594671 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv997274 | chr2:142760393-143599193 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv526107 | chr2:142768518-142884248 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv875253 | chr2:142805006-142855291 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv875254 | chr2:142833327-142931146 | Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:142829400-142838200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr2:142833400-142834400 | Enhancers | Brain Substantia Nigra | brain |
