Variant report

Variant	rs1783569
Chromosome Location	chr11:65787027-65787028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65681469..65683579-chr11:65785097..65787781,2	MCF-7	breast:
2	chr11:65769812..65778104-chr11:65786537..65794453,15	K562	blood:

Variant related genes	Relation type
ENSG00000175334	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10791838	0.97[EUR][1000 genomes]
rs10791840	0.94[EUR][1000 genomes]
rs10791841	0.94[EUR][1000 genomes]
rs10896075	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1125078	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12576969	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12790034	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12797282	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1815814	0.85[EUR][1000 genomes]
rs2430979	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2452681	0.93[ASN][1000 genomes]
rs2452682	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34274349	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34450124	0.84[AMR][1000 genomes]
rs3814744	0.94[EUR][1000 genomes]
rs4261293	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4267077	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4565902	0.94[EUR][1000 genomes]
rs4614460	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61895582	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6591199	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6591201	0.93[EUR][1000 genomes]
rs6591202	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6591203	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7110838	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7120611	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs730787	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7931167	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7951770	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9326365	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
6	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65780800-65788600	Weak transcription	NHEK	skin
2	chr11:65781200-65787600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:65781200-65788200	Weak transcription	Esophagus	oesophagus
4	chr11:65781400-65787200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:65782600-65789800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:65783000-65787600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:65783200-65787800	Weak transcription	NHLF	lung
8	chr11:65783200-65788000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:65783200-65788600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:65783400-65787400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:65783400-65788200	Weak transcription	A549	lung
12	chr11:65783400-65788600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:65783400-65811200	Weak transcription	Aorta	Aorta
14	chr11:65783600-65788400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:65783600-65788600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:65783800-65787800	Weak transcription	Spleen	Spleen
17	chr11:65783800-65788200	Weak transcription	NH-A	brain
18	chr11:65783800-65790200	Weak transcription	Right Atrium	heart
19	chr11:65784000-65787800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:65784000-65788600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:65784000-65788600	Weak transcription	Placenta	Placenta
22	chr11:65784200-65787600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:65784200-65787600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:65784200-65787800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:65784200-65787800	Weak transcription	Adipose Nuclei	Adipose
26	chr11:65784200-65787800	Weak transcription	HUVEC	blood vessel
27	chr11:65784200-65788200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:65784200-65788200	Weak transcription	HMEC	breast
29	chr11:65784200-65788800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:65784200-65788800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:65784200-65789800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:65784200-65789800	Weak transcription	Right Ventricle	heart
33	chr11:65784400-65787400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:65784400-65787800	Weak transcription	Osteobl	bone
35	chr11:65784400-65788200	Weak transcription	NHDF-Ad	bronchial
36	chr11:65784400-65788800	Weak transcription	HSMMtube	muscle
37	chr11:65785000-65788000	Weak transcription	Hela-S3	cervix
38	chr11:65785200-65788800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:65785400-65787800	Weak transcription	HSMM	muscle
40	chr11:65786000-65787400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:65786600-65787400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:65786800-65787800	Weak transcription	K562	blood

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