Variant report

Variant	rs10896075
Chromosome Location	chr11:65792213-65792214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65791225..65793923-chr11:65817959..65820856,2	K562	blood:
2	chr11:65791115..65793279-chr11:65800928..65803391,2	MCF-7	breast:
3	chr11:65769812..65778104-chr11:65786537..65794453,15	K562	blood:
4	chr11:65657179..65659552-chr11:65792099..65795097,2	MCF-7	breast:
5	chr11:65790800..65793677-chr11:65804088..65806843,2	MCF-7	breast:
6	chr11:65792176..65796965-chr11:65812595..65817477,5	MCF-7	breast:
7	chr11:65778738..65782540-chr11:65791690..65794306,3	MCF-7	breast:
8	chr11:65772051..65774698-chr11:65790348..65792220,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175334	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000175315	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000175229	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1055615	1.00[CEU][hapmap]
rs10791838	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10791840	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10791841	0.95[EUR][1000 genomes]
rs10896077	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10896081	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10896089	1.00[CEU][hapmap]
rs10896091	1.00[CEU][hapmap]
rs11227410	1.00[CEU][hapmap]
rs11227411	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11227413	1.00[CEU][hapmap]
rs11227415	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1125078	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607393	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs12576969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12790034	0.90[EUR][1000 genomes]
rs12797282	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1783569	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1815814	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2293121	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2430979	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2452682	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs34274349	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3814744	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3825067	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs3862386	0.94[CEU][hapmap]
rs4261293	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4267077	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4565902	0.95[EUR][1000 genomes]
rs4614460	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs535395	1.00[CEU][hapmap]
rs61895581	0.81[ASN][1000 genomes]
rs61895582	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61895584	0.89[ASN][1000 genomes]
rs6591199	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6591201	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591202	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591207	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs6591208	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7110838	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7120326	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7120611	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs730787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7931167	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7941469	1.00[CEU][hapmap]
rs7946917	0.86[CEU][hapmap]
rs7951770	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326365	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9645684	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
3	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
4	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
5	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
6	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65783400-65811200	Weak transcription	Aorta	Aorta
2	chr11:65790000-65800800	Weak transcription	HSMMtube	muscle
3	chr11:65790400-65812600	Weak transcription	Right Atrium	heart
4	chr11:65790400-65818600	Weak transcription	HSMM	muscle
5	chr11:65791200-65792600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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