Variant report

Variant	rs9326365
Chromosome Location	chr11:65807885-65807886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65802624..65805080-chr11:65807648..65810087,2	K562	blood:
2	chr11:65685069..65686601-chr11:65807675..65809413,2	K562	blood:
3	chr11:65806638..65808886-chr11:65819440..65821363,2	K562	blood:
4	chr11:65771785..65773874-chr11:65806005..65808785,2	K562	blood:
5	chr11:65627802..65630146-chr11:65806224..65808283,2	K562	blood:
6	chr11:65806561..65808333-chr11:65818685..65820771,2	MCF-7	breast:
7	chr11:65805915..65809012-chr11:65818044..65820074,3	MCF-7	breast:
8	chr11:65772402..65774686-chr11:65805406..65808291,2	MCF-7	breast:
9	chr11:65806835..65809715-chr11:65810972..65814336,3	MCF-7	breast:
10	chr11:65657373..65660327-chr11:65806833..65809672,2	K562	blood:
11	chr11:65806019..65808419-chr11:65809949..65812700,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175573	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000175229	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000172757	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10791838	0.85[EUR][1000 genomes]
rs10791840	0.89[EUR][1000 genomes]
rs10791841	0.89[EUR][1000 genomes]
rs10896075	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1125078	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12576969	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12797282	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1783569	0.84[EUR][1000 genomes]
rs2430979	0.90[EUR][1000 genomes]
rs2452682	0.82[EUR][1000 genomes]
rs34274349	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814744	0.89[EUR][1000 genomes]
rs4261293	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4267077	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4565902	0.89[EUR][1000 genomes]
rs4614460	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61895582	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61895584	0.81[ASN][1000 genomes]
rs6591199	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6591201	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6591202	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6591203	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7110838	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7120611	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs730787	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7931167	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7951770	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
5	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv897770	chr11:65803750-65824472	Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65783400-65811200	Weak transcription	Aorta	Aorta
2	chr11:65790400-65812600	Weak transcription	Right Atrium	heart
3	chr11:65790400-65818600	Weak transcription	HSMM	muscle
4	chr11:65803800-65812400	Weak transcription	Pancreas	Pancrea
5	chr11:65805000-65810000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:65805000-65815800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:65805200-65808400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:65805400-65808400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:65805400-65808400	Weak transcription	Brain Germinal Matrix	brain
10	chr11:65805600-65808400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:65805600-65809000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:65805800-65809000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:65805800-65809400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:65806000-65808600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:65806000-65810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:65806800-65808400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:65806800-65808600	Weak transcription	Brain Anterior Caudate	brain
18	chr11:65806800-65811800	Strong transcription	Fetal Brain Female	brain
19	chr11:65807000-65808800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:65807200-65808800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:65807400-65809200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:65807400-65812400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:65807600-65808200	Enhancers	Adipose Nuclei	Adipose
24	chr11:65807600-65808800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:65807600-65808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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