Variant report

Variant	rs10896077
Chromosome Location	chr11:65851733-65851734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65850193..65852902-chr11:66111593..66113196,2	MCF-7	breast:
2	chr11:65849463..65852379-chr11:66024191..66026545,2	K562	blood:
3	chr1:145381411..145383817-chr11:65849842..65852203,2	MCF-7	breast:
4	chr11:65654594..65656480-chr11:65848880..65851795,2	K562	blood:

Variant related genes	Relation type
ENSG00000201558	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000174996	Chromatin interaction
ENSG00000174744	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1055615	1.00[CEU][hapmap]
rs10750777	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10750778	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10750780	0.85[EUR][1000 genomes]
rs10750781	0.83[EUR][1000 genomes]
rs10791838	1.00[CEU][hapmap]
rs10791840	1.00[CEU][hapmap]
rs10791849	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791850	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10791851	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10791852	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10791853	0.94[EUR][1000 genomes]
rs10791854	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10791855	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10791856	0.93[EUR][1000 genomes]
rs10791858	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10791859	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10791860	0.87[EUR][1000 genomes]
rs10791861	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs10791862	0.83[EUR][1000 genomes]
rs10791863	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes]
rs10896075	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10896076	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10896080	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896085	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896087	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896090	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896092	0.94[EUR][1000 genomes]
rs10896093	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10896094	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10896095	0.93[EUR][1000 genomes]
rs10896097	0.94[EUR][1000 genomes]
rs10896098	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10896099	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10896100	0.87[EUR][1000 genomes]
rs10896105	0.85[EUR][1000 genomes]
rs11227403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227409	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227410	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227414	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227420	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11227426	0.95[EUR][1000 genomes]
rs11227433	0.85[EUR][1000 genomes]
rs11227439	0.83[EUR][1000 genomes]
rs11227447	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11227448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11607393	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12049852	0.96[EUR][1000 genomes]
rs12226649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576969	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs12797158	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12797586	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12800670	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1717671	0.90[EUR][1000 genomes]
rs1862005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1987678	0.96[EUR][1000 genomes]
rs2017969	0.80[EUR][1000 genomes]
rs2155030	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs2155031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs2155198	0.82[CEU][hapmap];0.88[YRI][hapmap];0.83[EUR][1000 genomes]
rs2155201	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes]
rs2177053	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2177054	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2236651	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs2236652	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[EUR][1000 genomes]
rs2276036	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs2293121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2298466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2298468	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2430979	1.00[CEU][hapmap]
rs2452682	1.00[CEU][hapmap]
rs2889313	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3088328	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3814744	1.00[CEU][hapmap]
rs3825067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3862386	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3953856	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4013917	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4393319	0.85[EUR][1000 genomes]
rs4483592	0.84[EUR][1000 genomes]
rs4604890	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471484	0.94[EUR][1000 genomes]
rs476551	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs485857	0.94[EUR][1000 genomes]
rs488320	0.94[EUR][1000 genomes]
rs512421	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs535395	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs571434	0.94[EUR][1000 genomes]
rs580891	0.93[EUR][1000 genomes]
rs6591203	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6591207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6591208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7115081	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124165	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7127808	0.83[EUR][1000 genomes]
rs730787	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7925123	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[EUR][1000 genomes]
rs7926402	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7929909	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7931477	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7931544	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7935336	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7937281	0.94[EUR][1000 genomes]
rs7941431	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7941469	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7942894	0.93[EUR][1000 genomes]
rs7943911	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7946447	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7946917	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7951079	0.85[EUR][1000 genomes]
rs918299	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9645684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9736673	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65839600-65854600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:65840600-65870600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:65842200-65867800	Weak transcription	Ovary	ovary
4	chr11:65842400-65851800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:65845200-65854400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:65845800-65868800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:65846200-65853600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:65847200-65852000	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:65847600-65852000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:65847600-65852000	Enhancers	HUVEC	blood vessel
11	chr11:65847600-65852800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr11:65847600-65852800	Enhancers	Osteobl	bone
13	chr11:65847600-65853000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:65848000-65854800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:65848400-65874200	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:65849000-65853600	Enhancers	Fetal Heart	heart
17	chr11:65849200-65852200	Enhancers	Hela-S3	cervix
18	chr11:65849200-65853400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:65849200-65879600	Weak transcription	Aorta	Aorta
20	chr11:65849400-65852000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:65849400-65854600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:65849400-65856200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:65849400-65858000	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:65849400-65858800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:65849600-65852000	Enhancers	Fetal Thymus	thymus
26	chr11:65849600-65853400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:65849600-65856800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr11:65849600-65857000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:65849600-65858600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr11:65849800-65853000	Enhancers	Primary hematopoietic stem cells	blood
31	chr11:65849800-65857800	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr11:65849800-65858200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:65849800-65867600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:65850000-65851800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:65850000-65852400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr11:65850000-65855800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr11:65850200-65851800	Enhancers	Adipose Nuclei	Adipose
38	chr11:65850200-65851800	Enhancers	HSMM	muscle
39	chr11:65850200-65866200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:65850400-65851800	Enhancers	Fetal Brain Male	brain
41	chr11:65850400-65852000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:65850400-65852000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:65850400-65852200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:65850400-65852200	Enhancers	HepG2	liver
45	chr11:65850600-65851800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:65850600-65851800	Enhancers	Fetal Lung	lung
47	chr11:65850600-65851800	Enhancers	NH-A	brain
48	chr11:65850600-65852000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:65850600-65852000	Flanking Active TSS	A549	lung
50	chr11:65850600-65852400	Enhancers	Brain Anterior Caudate	brain

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