Variant report

Variant	rs2155201
Chromosome Location	chr11:65992344-65992345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65985243..65987105-chr11:65991157..65993460,2	K562	blood:
2	chr11:65983052..65986048-chr11:65987938..65993154,6	K562	blood:
3	chr11:65992220..65994566-chr11:66000481..66002782,3	MCF-7	breast:
4	chr11:65991713..65994038-chr11:66048544..66051109,2	K562	blood:
5	chr11:65990668..65992905-chr11:66012040..66014914,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction
ENSG00000174871	Chromatin interaction
ENSG00000255320	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1055615	0.82[CEU][hapmap]
rs10750777	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10750778	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10750780	0.89[ASN][1000 genomes]
rs10750781	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791840	0.81[CEU][hapmap]
rs10791849	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10791850	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10791851	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10791852	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10791853	0.85[EUR][1000 genomes]
rs10791854	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10791855	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10791856	0.84[EUR][1000 genomes]
rs10791858	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791859	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791860	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10791862	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10791863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896077	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes]
rs10896080	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896081	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896085	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896087	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896089	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896090	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896091	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896092	0.85[EUR][1000 genomes]
rs10896093	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896094	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896095	0.84[EUR][1000 genomes]
rs10896097	0.85[EUR][1000 genomes]
rs10896098	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896099	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896100	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896105	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227403	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227409	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227410	0.82[CEU][hapmap];0.94[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227413	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227414	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227415	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227420	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11227426	0.85[EUR][1000 genomes]
rs11227433	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227439	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11227447	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227448	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227452	0.91[ASN][1000 genomes]
rs11607393	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12049852	0.83[EUR][1000 genomes]
rs12226649	0.84[EUR][1000 genomes]
rs12576969	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs12797158	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12797586	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12800670	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1717671	0.81[EUR][1000 genomes]
rs1862005	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1987678	0.83[EUR][1000 genomes]
rs2017969	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155031	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155198	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177053	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2177054	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2236651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276036	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2282568	0.93[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2293121	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2298466	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2298468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2430979	0.81[CEU][hapmap]
rs2452682	0.81[CEU][hapmap]
rs2889313	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3088328	0.82[EUR][1000 genomes]
rs3132851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[ASN][1000 genomes]
rs3814744	0.82[CEU][hapmap]
rs3825067	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3862386	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3953856	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4013917	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4393319	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4483592	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4604890	0.81[EUR][1000 genomes]
rs471484	0.85[EUR][1000 genomes]
rs476551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs485857	0.85[EUR][1000 genomes]
rs488320	0.81[EUR][1000 genomes]
rs512421	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs535395	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs560393	0.95[ASN][1000 genomes]
rs571434	0.81[EUR][1000 genomes]
rs580891	0.83[EUR][1000 genomes]
rs6591203	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs6591207	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6591208	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7115081	0.84[EUR][1000 genomes]
rs7120326	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[EUR][1000 genomes]
rs7124165	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71270566	0.88[EUR][1000 genomes]
rs730787	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs7925123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926402	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7929909	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7931477	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7931544	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7935336	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7937281	0.85[EUR][1000 genomes]
rs7941431	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7941469	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs7942894	0.86[EUR][1000 genomes]
rs7943911	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7945723	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946917	0.89[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7951079	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs918299	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9645684	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9736673	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2155201	RP11-755F10.1	cis	Muscle Skeletal	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65961400-66011200	Weak transcription	Psoas Muscle	Psoas
2	chr11:65976600-66006000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:65976800-65996000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:65977200-65996000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:65977400-66010600	Strong transcription	Fetal Stomach	stomach
6	chr11:65977600-66018600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:65978000-65993000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:65979800-66001200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:65980000-65994000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:65982200-65995800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:65984600-66024200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:65984800-66000400	Weak transcription	HMEC	breast
13	chr11:65985200-65998800	Weak transcription	NHDF-Ad	bronchial
14	chr11:65985800-66017800	Weak transcription	Fetal Heart	heart
15	chr11:65987800-66003400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:65988200-66001200	Weak transcription	Small Intestine	intestine
17	chr11:65988400-65992400	Weak transcription	HUVEC	blood vessel
18	chr11:65988400-65995800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:65988600-65995200	Weak transcription	Brain Angular Gyrus	brain
20	chr11:65988600-65995200	Weak transcription	NHLF	lung
21	chr11:65988600-65997800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:65988800-65992400	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:65988800-65992400	Weak transcription	Fetal Lung	lung
24	chr11:65988800-65992400	Weak transcription	Left Ventricle	heart
25	chr11:65988800-65992400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:65988800-65994600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:65988800-65995000	Weak transcription	Liver	Liver
28	chr11:65988800-65997800	Weak transcription	Pancreas	Pancrea
29	chr11:65988800-65998400	Weak transcription	Brain Substantia Nigra	brain
30	chr11:65988800-65998800	Weak transcription	Colonic Mucosa	Colon
31	chr11:65989000-65995200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:65989000-65997800	Weak transcription	Right Ventricle	heart
33	chr11:65989400-65992400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:65989600-66024200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:65990000-65995200	Weak transcription	Gastric	stomach
36	chr11:65990000-66002600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:65990200-65995200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:65990200-65995200	Weak transcription	Esophagus	oesophagus
39	chr11:65990200-65995800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:65990200-65995800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:65990200-65996200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:65990200-65998600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:65990200-65999200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:65990200-65999200	Weak transcription	Stomach Mucosa	stomach
45	chr11:65990200-66003000	Weak transcription	HepG2	liver
46	chr11:65990200-66007600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:65990200-66019800	Strong transcription	Primary T cells from cord blood	blood
48	chr11:65990400-65992400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:65990400-65994600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr11:65990400-65995400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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