Variant report

Variant	rs10791849
Chromosome Location	chr11:65890597-65890598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65890121..65892249-chr11:65905098..65907010,2	MCF-7	breast:
2	chr11:65882960..65886510-chr11:65888191..65894408,6	K562	blood:
3	chr11:65885486..65887843-chr11:65890510..65893124,3	MCF-7	breast:
4	chr11:65887286..65888969-chr11:65890476..65893047,2	K562	blood:
5	chr11:65835624..65840174-chr11:65890352..65895526,9	MCF-7	breast:
6	chr11:65879009..65884313-chr11:65890112..65896035,10	MCF-7	breast:
7	chr11:65818637..65820163-chr11:65890071..65893030,2	MCF-7	breast:
8	chr11:65888325..65891190-chr11:65892126..65894347,2	MCF-7	breast:
9	chr11:65835889..65841300-chr11:65890203..65896604,9	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SF3B2-2	chr11:65889476-65890855	ncRnaDb_ncrna_FR397911_1

No data

Variant related genes	Relation type
ENSG00000087365	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000255038	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10750777	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10750778	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10750780	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10750781	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10791850	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10791851	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10791852	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10791853	0.94[EUR][1000 genomes]
rs10791854	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10791855	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10791856	0.93[EUR][1000 genomes]
rs10791858	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10791859	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10791860	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10791861	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10791862	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10791863	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896076	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10896077	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896080	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896081	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896085	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896087	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896089	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896090	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896091	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896092	0.94[EUR][1000 genomes]
rs10896093	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896094	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896095	0.93[EUR][1000 genomes]
rs10896097	0.94[EUR][1000 genomes]
rs10896098	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896099	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896100	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10896105	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11227403	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11227409	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227410	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227411	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227413	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227414	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11227415	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11227420	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11227426	0.95[EUR][1000 genomes]
rs11227433	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227439	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227447	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11227448	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11607393	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12049852	0.96[EUR][1000 genomes]
rs12226649	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12797158	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12797586	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12800670	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1717671	0.90[EUR][1000 genomes]
rs1862005	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1987678	0.96[EUR][1000 genomes]
rs2017969	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2155030	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2155031	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2155198	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2155201	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2177053	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2177054	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2236651	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2236652	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2276036	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2282568	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2293121	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2298466	0.87[ASN][1000 genomes]
rs2298468	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2889313	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3088328	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3132851	0.84[ASN][1000 genomes]
rs3814738	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3825067	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862386	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3953856	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4013917	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4393319	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4483592	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4604890	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs471484	0.94[EUR][1000 genomes]
rs476551	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs485857	0.94[EUR][1000 genomes]
rs488320	0.94[EUR][1000 genomes]
rs512421	0.87[ASN][1000 genomes]
rs535395	0.96[EUR][1000 genomes]
rs560393	0.84[ASN][1000 genomes]
rs571434	0.94[EUR][1000 genomes]
rs580891	0.97[EUR][1000 genomes]
rs6591207	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6591208	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115081	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7120326	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7124165	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71270566	0.80[EUR][1000 genomes]
rs7127808	0.86[EUR][1000 genomes]
rs7925123	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7926402	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929909	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7931477	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931544	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7935336	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937281	0.94[EUR][1000 genomes]
rs7941431	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941469	0.96[EUR][1000 genomes]
rs7942894	0.93[EUR][1000 genomes]
rs7943911	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7945723	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7946447	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946917	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7951079	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs918299	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9645684	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9736673	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65868600-65893800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:65880400-65905000	Weak transcription	Fetal Stomach	stomach
3	chr11:65880600-65894400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:65881000-65892000	Weak transcription	Brain Anterior Caudate	brain
5	chr11:65881000-65894600	Weak transcription	Gastric	stomach
6	chr11:65881600-65893800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:65883800-65894400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:65884000-65893400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:65884200-65894200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:65884600-65893600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:65884600-65893600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:65885000-65893000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:65885600-65892800	Weak transcription	Primary B cells from cord blood	blood
14	chr11:65885600-65893000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:65885600-65893600	Weak transcription	Thymus	Thymus
16	chr11:65885800-65890600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr11:65886000-65890800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:65886600-65892200	Weak transcription	Esophagus	oesophagus
19	chr11:65886600-65893200	Weak transcription	Fetal Thymus	thymus
20	chr11:65887200-65893600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:65887200-65900400	Weak transcription	Fetal Brain Male	brain
22	chr11:65887400-65891400	Weak transcription	Stomach Mucosa	stomach
23	chr11:65887400-65891400	Weak transcription	K562	blood
24	chr11:65887400-65891600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:65887400-65891600	Weak transcription	Right Ventricle	heart
26	chr11:65887400-65892000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:65887400-65892000	Weak transcription	Brain Angular Gyrus	brain
28	chr11:65887400-65893400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:65887400-65893600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:65887400-65893600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:65887400-65893600	Weak transcription	Spleen	Spleen
32	chr11:65887400-65894000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:65887400-65894000	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:65887400-65894200	Weak transcription	Right Atrium	heart
35	chr11:65887600-65891400	Weak transcription	NHDF-Ad	bronchial
36	chr11:65887600-65891800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:65887600-65891800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:65887600-65892000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:65887600-65892000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:65887600-65892200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:65887600-65892200	Weak transcription	Small Intestine	intestine
42	chr11:65887600-65893200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:65887600-65893200	Weak transcription	Fetal Intestine Large	intestine
44	chr11:65887600-65893600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:65887600-65893600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:65887800-65891400	Weak transcription	NHLF	lung
47	chr11:65887800-65892200	Weak transcription	Left Ventricle	heart
48	chr11:65888000-65891400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:65888000-65891400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:65888000-65891600	Weak transcription	HMEC	breast

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