Variant report

Variant	rs10791862
Chromosome Location	chr11:66013664-66013665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-YIF1A-6	chr11:66013647-66015172	NONHSAT022268
2	lnc-YIF1A-6	chr11:66013243-66013844	NONHSAT022270
3	lnc-YIF1A-6	chr11:66013587-66013710	ENSG00000255320.1
4	lnc-YIF1A-6	chr11:66013647-66013844	NONHSAT022267

Extended variants
information (count: 117 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10750777	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10750778	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10750780	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10750781	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10791849	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10791850	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791851	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791852	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791853	0.84[EUR][1000 genomes]
rs10791854	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10791855	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10791856	0.83[EUR][1000 genomes]
rs10791858	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10791859	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10791860	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10791861	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10791863	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896077	0.83[EUR][1000 genomes]
rs10896080	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10896081	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10896085	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10896087	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10896089	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896090	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896091	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896092	0.84[EUR][1000 genomes]
rs10896093	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896094	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896095	0.83[EUR][1000 genomes]
rs10896097	0.84[EUR][1000 genomes]
rs10896098	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896099	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896100	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10896105	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11227403	0.83[EUR][1000 genomes]
rs11227409	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227410	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227411	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227413	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227414	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11227415	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11227420	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227426	0.85[EUR][1000 genomes]
rs11227433	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11227439	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227447	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11227448	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11227452	0.86[ASN][1000 genomes]
rs11607393	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12049852	0.82[EUR][1000 genomes]
rs12226649	0.83[EUR][1000 genomes]
rs12797158	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12797586	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12800670	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1862005	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1987678	0.82[EUR][1000 genomes]
rs2017969	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2155030	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155031	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155198	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155201	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177053	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2177054	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2236651	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2236652	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2276036	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2282568	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2293121	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2298466	0.96[ASN][1000 genomes]
rs2298468	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2889313	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3088328	0.81[EUR][1000 genomes]
rs3132851	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3814738	0.92[ASN][1000 genomes]
rs3825067	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3862386	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3953856	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4013917	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4393319	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4483592	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4604890	0.80[EUR][1000 genomes]
rs471484	0.84[EUR][1000 genomes]
rs476551	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs485857	0.84[EUR][1000 genomes]
rs488320	0.80[EUR][1000 genomes]
rs512421	0.95[ASN][1000 genomes]
rs535395	0.82[EUR][1000 genomes]
rs560393	0.91[ASN][1000 genomes]
rs571434	0.80[EUR][1000 genomes]
rs580891	0.83[EUR][1000 genomes]
rs6591207	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6591208	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7115081	0.83[EUR][1000 genomes]
rs7120326	0.83[EUR][1000 genomes]
rs7124165	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71270566	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7925123	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7926402	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7929909	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7931477	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7931544	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7935336	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7937281	0.84[EUR][1000 genomes]
rs7941431	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7941469	0.82[EUR][1000 genomes]
rs7942894	0.85[EUR][1000 genomes]
rs7943911	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7945723	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7946917	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7951079	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs918299	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9645684	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9736673	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10791862	RP11-755F10.1	cis	Muscle Skeletal	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65977600-66018600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:65984600-66024200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:65985800-66017800	Weak transcription	Fetal Heart	heart
4	chr11:65989600-66024200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:65990200-66019800	Strong transcription	Primary T cells from cord blood	blood
6	chr11:65990600-66015800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:65990600-66018400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:65990800-66018600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:65991000-66015400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:65991200-66018600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:65991200-66018600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:65991600-66018400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:65991600-66018400	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:65991800-66018400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:65993800-66018400	Strong transcription	Stomach Smooth Muscle	stomach
16	chr11:65994400-66015200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:65994400-66018600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:65994600-66013800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:65994600-66018600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:65995000-66018000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:65995000-66018800	Strong transcription	Fetal Intestine Small	intestine
22	chr11:65995200-66015600	Strong transcription	Lung	lung
23	chr11:65996000-66024400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:65997400-66013800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:65997400-66018600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:65997600-66013800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:65997600-66015400	Strong transcription	Brain Germinal Matrix	brain
28	chr11:65997600-66018400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:65998000-66013800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:65998000-66018600	Strong transcription	Fetal Brain Female	brain
31	chr11:65999800-66013800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:65999800-66024000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:66000800-66024200	Weak transcription	HMEC	breast
34	chr11:66001600-66024200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:66002000-66021000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:66003400-66017400	Weak transcription	Hela-S3	cervix
37	chr11:66003400-66024200	Weak transcription	HepG2	liver
38	chr11:66003400-66024200	Weak transcription	NHDF-Ad	bronchial
39	chr11:66004000-66020800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:66005000-66014000	Strong transcription	Pancreas	Pancrea
41	chr11:66006000-66015000	Strong transcription	Gastric	stomach
42	chr11:66006800-66017800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:66006800-66024600	Weak transcription	Ovary	ovary
44	chr11:66007000-66024200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:66007200-66024200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:66007800-66024200	Weak transcription	Small Intestine	intestine
47	chr11:66008000-66023800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:66008200-66014600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:66008200-66021200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:66008600-66014200	Strong transcription	A549	lung

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