Variant report

Variant	rs10896098
Chromosome Location	chr11:65968416-65968417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65964002..65966014-chr11:65967353..65969293,2	K562	blood:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10750777	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10750778	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10750780	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10750781	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10791849	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10791850	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10791851	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10791852	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10791853	0.97[EUR][1000 genomes]
rs10791854	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10791855	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10791856	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10791858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791859	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791860	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10791861	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10791862	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10791863	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10896076	0.80[AFR][1000 genomes]
rs10896077	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10896080	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896081	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896085	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896087	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896089	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896090	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896091	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896092	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10896093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896094	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896095	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10896097	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10896099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896100	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896105	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11227403	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227409	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227410	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227411	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227413	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227414	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227415	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227420	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11227426	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11227433	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227439	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11227447	0.93[ASN][1000 genomes]
rs11227448	0.93[ASN][1000 genomes]
rs11227452	0.87[ASN][1000 genomes]
rs11607393	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12049852	0.95[EUR][1000 genomes]
rs12226649	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12797158	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12797586	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12800670	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1717671	0.92[EUR][1000 genomes]
rs1862005	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1987678	0.95[EUR][1000 genomes]
rs2017969	0.92[ASN][1000 genomes]
rs2155030	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155031	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155198	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155201	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2177053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2177054	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2236651	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2236652	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276036	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2282568	0.92[ASN][1000 genomes]
rs2293121	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2298466	0.97[ASN][1000 genomes]
rs2298468	0.93[ASN][1000 genomes]
rs2889313	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3088328	0.94[EUR][1000 genomes]
rs3132851	0.93[ASN][1000 genomes]
rs3814738	0.93[ASN][1000 genomes]
rs3825067	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3862386	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3953856	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4013917	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4393319	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4483592	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4604890	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs471484	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs476551	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs485857	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs488320	0.93[EUR][1000 genomes]
rs512421	0.96[ASN][1000 genomes]
rs535395	0.95[EUR][1000 genomes]
rs560393	0.92[ASN][1000 genomes]
rs571434	0.93[EUR][1000 genomes]
rs580891	0.96[EUR][1000 genomes]
rs6591207	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6591208	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7115081	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7120326	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7124165	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7127808	0.85[EUR][1000 genomes]
rs7925123	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7926402	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7929909	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7931477	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7931544	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7935336	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7937281	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7941431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7941469	0.95[EUR][1000 genomes]
rs7942894	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7943911	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7945723	0.93[ASN][1000 genomes]
rs7946447	0.88[EUR][1000 genomes]
rs7946917	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7951079	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs918299	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9645684	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9736673	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv3332923	chr11:65961593-65981589	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65929600-65977800	Weak transcription	HSMMtube	muscle
2	chr11:65938400-65978000	Weak transcription	Aorta	Aorta
3	chr11:65940000-65978000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:65940400-65978000	Weak transcription	Esophagus	oesophagus
5	chr11:65944400-65977800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:65949800-65977800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:65950200-65978400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:65957000-65978400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:65958800-65977800	Weak transcription	Lung	lung
10	chr11:65958800-65978600	Weak transcription	Pancreas	Pancrea
11	chr11:65958800-65983600	Weak transcription	Small Intestine	intestine
12	chr11:65958800-65989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:65959200-65989400	Weak transcription	K562	blood
14	chr11:65959400-65983400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:65959600-65978400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:65959600-65983600	Weak transcription	Colonic Mucosa	Colon
17	chr11:65960200-65977800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:65960200-65978000	Weak transcription	Right Ventricle	heart
19	chr11:65960200-65984000	Weak transcription	Fetal Heart	heart
20	chr11:65960400-65978000	Weak transcription	Gastric	stomach
21	chr11:65960400-65978000	Weak transcription	HMEC	breast
22	chr11:65960600-65976600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:65960600-65980600	Weak transcription	Fetal Kidney	kidney
24	chr11:65960600-65983600	Weak transcription	Fetal Brain Male	brain
25	chr11:65961200-65983600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:65961400-65978000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:65961400-65978000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:65961400-66011200	Weak transcription	Psoas Muscle	Psoas
29	chr11:65961600-65979000	Weak transcription	Dnd41	blood
30	chr11:65962000-65978000	Weak transcription	Spleen	Spleen
31	chr11:65962200-65970000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:65962200-65983800	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:65962400-65977800	Weak transcription	Placenta	Placenta
34	chr11:65962400-65983600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:65962800-65983600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:65963000-65977800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr11:65963000-65984200	Weak transcription	HUVEC	blood vessel
38	chr11:65963400-65976600	Weak transcription	HSMM	muscle
39	chr11:65963400-65977000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:65963400-65978000	Weak transcription	Ovary	ovary
41	chr11:65963600-65976600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:65963600-65976800	Weak transcription	Liver	Liver
43	chr11:65963600-65977600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:65963800-65968600	Weak transcription	NHEK	skin
45	chr11:65963800-65978200	Weak transcription	Left Ventricle	heart
46	chr11:65964000-65978000	Weak transcription	Thymus	Thymus
47	chr11:65964000-65983600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:65964000-65989600	Weak transcription	Stomach Mucosa	stomach
49	chr11:65964800-65976600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:65965000-65968600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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