Variant report

Variant	rs10896076
Chromosome Location	chr11:65840668-65840669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65840242..65841877-chr11:65893961..65895607,2	MCF-7	breast:
2	chr11:65837799..65839374-chr11:65839439..65841570,2	MCF-7	breast:
3	chr11:65840513..65843599-chr11:65845942..65848991,3	K562	blood:
4	chr11:65839190..65841660-chr11:65977914..65980146,2	K562	blood:

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10750777	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10750778	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10791849	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10791850	0.84[ASN][1000 genomes]
rs10791851	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10791852	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10791854	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10791855	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10791858	0.80[AFR][1000 genomes]
rs10791859	0.80[AFR][1000 genomes]
rs10896077	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10896080	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10896081	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896085	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896087	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896089	0.84[ASN][1000 genomes]
rs10896090	0.84[ASN][1000 genomes]
rs10896091	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10896093	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10896094	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10896098	0.80[AFR][1000 genomes]
rs10896099	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11227395	0.84[EUR][1000 genomes]
rs11227403	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11227409	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11227410	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11227411	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227413	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227414	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227415	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227420	0.84[ASN][1000 genomes]
rs11607393	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12226649	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797158	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12797586	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12800670	0.81[ASN][1000 genomes]
rs1862005	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2177053	0.81[ASN][1000 genomes]
rs2177054	0.84[ASN][1000 genomes]
rs2293121	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2452681	0.84[EUR][1000 genomes]
rs2889313	0.81[ASN][1000 genomes]
rs3088328	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3825067	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3862386	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3953856	0.81[ASN][1000 genomes]
rs4013917	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4604890	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6591207	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6591208	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7115081	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120326	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124165	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7926402	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7929909	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7931477	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7931544	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7935336	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7941431	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7943911	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7946447	0.81[ASN][1000 genomes]
rs7946917	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs918299	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9645684	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9736673	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
4	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65838400-65841000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
2	chr11:65839000-65841400	Weak transcription	Ovary	ovary
3	chr11:65839000-65849800	Weak transcription	Psoas Muscle	Psoas
4	chr11:65839200-65840800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:65839200-65842200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:65839200-65843800	Weak transcription	Esophagus	oesophagus
7	chr11:65839200-65843800	Weak transcription	Pancreas	Pancrea
8	chr11:65839200-65844200	Weak transcription	Aorta	Aorta
9	chr11:65839200-65846800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:65839200-65847600	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:65839200-65847800	Weak transcription	Colonic Mucosa	Colon
12	chr11:65839400-65841400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:65839400-65841400	Weak transcription	Placenta	Placenta
14	chr11:65839400-65847200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:65839400-65847200	Weak transcription	Right Atrium	heart
16	chr11:65839400-65847600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:65839400-65847600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:65839400-65847600	Weak transcription	Small Intestine	intestine
19	chr11:65839400-65847800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:65839400-65848800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:65839400-65850400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:65839400-65850400	Weak transcription	Fetal Intestine Large	intestine
23	chr11:65839400-65850800	Weak transcription	Liver	Liver
24	chr11:65839400-65850800	Weak transcription	Fetal Kidney	kidney
25	chr11:65839400-65850800	Weak transcription	Right Ventricle	heart
26	chr11:65839600-65840800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:65839600-65840800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:65839600-65840800	Enhancers	Fetal Brain Male	brain
29	chr11:65839600-65841000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:65839600-65841000	Enhancers	HepG2	liver
31	chr11:65839600-65841200	Weak transcription	Fetal Intestine Small	intestine
32	chr11:65839600-65841400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:65839600-65841400	Weak transcription	HSMMtube	muscle
34	chr11:65839600-65841600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:65839600-65844000	Weak transcription	HMEC	breast
36	chr11:65839600-65850400	Weak transcription	Brain Substantia Nigra	brain
37	chr11:65839600-65854600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:65839800-65841000	Genic enhancers	Primary B cells from cord blood	blood
39	chr11:65839800-65841000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
40	chr11:65839800-65841800	Genic enhancers	Primary B cells from peripheral blood	blood
41	chr11:65839800-65845200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr11:65840000-65840800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:65840000-65840800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:65840000-65840800	Enhancers	Brain Angular Gyrus	brain
45	chr11:65840000-65840800	Enhancers	Spleen	Spleen
46	chr11:65840000-65840800	Genic enhancers	Dnd41	blood
47	chr11:65840000-65841000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
48	chr11:65840000-65841000	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr11:65840000-65841200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:65840000-65841400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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