Variant report

Variant	rs17866102
Chromosome Location	chr7:126706020-126706021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10081237	1.00[AMR][1000 genomes]
rs10225020	1.00[YRI][hapmap]
rs10233335	1.00[YRI][hapmap]
rs10239617	1.00[AMR][1000 genomes]
rs10240626	1.00[AMR][1000 genomes]
rs10252488	1.00[AMR][1000 genomes]
rs10254174	1.00[AMR][1000 genomes]
rs10262861	1.00[AMR][1000 genomes]
rs17865523	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866100	1.00[YRI][hapmap]
rs17866773	1.00[YRI][hapmap]
rs17867043	1.00[AMR][1000 genomes]
rs17867257	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869242	0.83[YRI][hapmap]
rs17869369	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869370	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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