Variant report

Variant	rs17866921
Chromosome Location	chr4:118321235-118321236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	4:118320200-118324249..4:118414019-118416561	Hela-S3	cervix:
2	4:118320200-118324249..4:118559839-118566258	GM12878	blood:
3	4:118320200-118324249..4:118722741-118723956	H1-hESC	embryonic stem cell:	embryo
4	4:118320200-118324249..4:118735152-118737645	GM12878	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10005949	0.84[AMR][1000 genomes]
rs10012436	0.84[AMR][1000 genomes]
rs10027838	0.84[AMR][1000 genomes]
rs10471009	0.84[AMR][1000 genomes]
rs13103240	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13113670	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13119124	0.84[AMR][1000 genomes]
rs13138792	0.84[AMR][1000 genomes]
rs17865009	0.84[AMR][1000 genomes]
rs17865320	0.84[AMR][1000 genomes]
rs17865878	0.84[AMR][1000 genomes]
rs17866198	0.84[AMR][1000 genomes]
rs17867182	0.84[AMR][1000 genomes]
rs17867291	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28610484	0.84[AMR][1000 genomes]
rs4834611	0.84[AMR][1000 genomes]
rs72914195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307435	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879825	chr4:118292314-118333367	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv470068	chr4:118296960-118327792	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3370581	chr4:118308398-118331294	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118313800-118322200	Weak transcription	Pancreas	Pancrea
2	chr4:118321000-118321400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:118321000-118321400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:118321000-118321400	Active TSS	Brain Cingulate Gyrus	brain
5	chr4:118321000-118321400	Enhancers	HMEC	breast
6	chr4:118321000-118321400	Flanking Active TSS	HSMM	muscle
7	chr4:118321000-118321600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:118321000-118321600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:118321000-118321600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:118321000-118321600	Flanking Active TSS	Dnd41	blood
11	chr4:118321000-118321600	Flanking Active TSS	HUVEC	blood vessel
12	chr4:118321000-118321600	Active TSS	Osteobl	bone
13	chr4:118321000-118321800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:118321000-118321800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:118321000-118321800	Enhancers	NHEK	skin
16	chr4:118321200-118321400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:118321200-118321400	Enhancers	Brain Hippocampus Middle	brain
18	chr4:118321200-118321600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:118321200-118321600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:118321200-118321600	Enhancers	Brain Angular Gyrus	brain
21	chr4:118321200-118321600	Flanking Active TSS	NH-A	brain
22	chr4:118321200-118322200	Enhancers	Muscle Satellite Cultured Cells	--

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