Variant report
| Variant | rs72914195 |
|---|---|
| Chromosome Location | chr4:118314906-118314907 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 4:118313000-118315008..4:118319405-118319911 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10005949 | 0.84[AMR][1000 genomes] |
| rs10012436 | 0.84[AMR][1000 genomes] |
| rs10027838 | 0.84[AMR][1000 genomes] |
| rs10471009 | 0.84[AMR][1000 genomes] |
| rs13103240 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13113670 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13119124 | 0.84[AMR][1000 genomes] |
| rs13138792 | 0.84[AMR][1000 genomes] |
| rs17865009 | 0.84[AMR][1000 genomes] |
| rs17865320 | 0.84[AMR][1000 genomes] |
| rs17865878 | 0.84[AMR][1000 genomes] |
| rs17866198 | 0.84[AMR][1000 genomes] |
| rs17866921 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17867182 | 0.84[AMR][1000 genomes] |
| rs17867291 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs28610484 | 0.84[AMR][1000 genomes] |
| rs4834611 | 0.84[AMR][1000 genomes] |
| rs9307435 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004858 | chr4:118248984-118382051 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv427692 | chr4:118262899-118437573 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879825 | chr4:118292314-118333367 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| 4 | nsv879826 | chr4:118292314-118351381 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv470068 | chr4:118296960-118327792 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | esv3370581 | chr4:118308398-118331294 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:118307200-118321000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:118313800-118322200 | Weak transcription | Pancreas | Pancrea |
